##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545636_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1074745 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.95477159698347 31.0 31.0 34.0 31.0 34.0 2 32.65427147835068 34.0 31.0 34.0 31.0 34.0 3 32.567855630870575 34.0 31.0 34.0 31.0 34.0 4 35.9920241545669 37.0 35.0 37.0 35.0 37.0 5 35.72940185811518 37.0 35.0 37.0 35.0 37.0 6 35.72794290738733 37.0 35.0 37.0 33.0 37.0 7 35.72720319703744 37.0 35.0 37.0 33.0 37.0 8 35.706591796193514 37.0 35.0 37.0 33.0 37.0 9 37.9319084992254 39.0 38.0 39.0 35.0 39.0 10 37.93388757333135 39.0 39.0 39.0 35.0 39.0 11 37.74953221461835 39.0 38.0 39.0 35.0 39.0 12 37.21353344281667 39.0 37.0 39.0 33.0 39.0 13 36.93780571205263 39.0 37.0 39.0 33.0 39.0 14 37.326393702692265 39.0 35.0 41.0 33.0 41.0 15 37.01909476201332 39.0 35.0 41.0 31.0 41.0 16 37.11723339024606 39.0 35.0 41.0 32.0 41.0 17 37.32622901246342 39.0 35.0 41.0 32.0 41.0 18 37.44109253823 39.0 35.0 41.0 33.0 41.0 19 37.46163136371884 39.0 35.0 41.0 33.0 41.0 20 37.40940595210957 39.0 35.0 41.0 33.0 41.0 21 37.38645446129082 39.0 35.0 41.0 33.0 41.0 22 37.30922218758868 39.0 35.0 41.0 33.0 41.0 23 37.216990076715874 39.0 35.0 41.0 32.0 41.0 24 37.20272157581566 39.0 35.0 41.0 32.0 41.0 25 37.16905963740236 39.0 35.0 41.0 32.0 41.0 26 37.091979027583285 39.0 35.0 41.0 32.0 41.0 27 36.99652103522231 39.0 35.0 41.0 32.0 41.0 28 36.89326956626921 38.0 35.0 41.0 32.0 41.0 29 36.821346458927465 38.0 35.0 41.0 32.0 41.0 30 36.75536522616993 38.0 35.0 41.0 31.0 41.0 31 36.72572470679091 38.0 35.0 41.0 31.0 41.0 32 36.628532349534076 38.0 35.0 41.0 31.0 41.0 33 36.467923088732675 38.0 35.0 41.0 31.0 41.0 34 36.42140228612369 38.0 35.0 41.0 31.0 41.0 35 36.29905605515727 38.0 35.0 41.0 30.0 41.0 36 36.26685958064471 38.0 35.0 41.0 30.0 41.0 37 36.1548395200722 38.0 35.0 41.0 30.0 41.0 38 36.04531679607721 38.0 35.0 40.0 30.0 41.0 39 35.99383202527111 38.0 35.0 40.0 30.0 41.0 40 35.89844939962503 38.0 35.0 40.0 30.0 41.0 41 35.8806023754472 38.0 35.0 40.0 30.0 41.0 42 35.733619602789496 38.0 35.0 40.0 29.0 41.0 43 35.66203890225123 38.0 35.0 40.0 29.0 41.0 44 35.63031509799999 37.0 35.0 40.0 29.0 41.0 45 35.62149067918436 37.0 35.0 40.0 29.0 41.0 46 35.54190994142797 37.0 34.0 40.0 29.0 41.0 47 35.40471460672067 37.0 34.0 40.0 28.0 41.0 48 35.38873686316289 37.0 34.0 40.0 28.0 41.0 49 35.36987471446715 37.0 34.0 40.0 28.0 41.0 50 35.28241117660468 37.0 34.0 40.0 28.0 41.0 51 35.190402374516744 36.0 34.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 6.0 10 1.0 11 1.0 12 9.0 13 5.0 14 2.0 15 13.0 16 34.0 17 98.0 18 186.0 19 475.0 20 783.0 21 1350.0 22 2149.0 23 3485.0 24 5168.0 25 7775.0 26 10735.0 27 13123.0 28 15327.0 29 18043.0 30 21741.0 31 27293.0 32 34043.0 33 44456.0 34 73123.0 35 169855.0 36 72318.0 37 94086.0 38 138138.0 39 320685.0 40 239.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 1.505101210054478 92.5634452823693 2.574192017641394 3.3572614899348214 2 3.159447124666782 1.9443681989681272 92.16074510697887 2.7354395693862266 3 26.021335293488224 15.758714857943046 45.515726986401425 12.704222862167306 4 27.392637323272034 14.637146485910613 46.02338229068291 11.94683390013445 5 23.3377219712583 14.11348738537979 48.64912141949951 13.899669223862404 6 20.471088490758273 14.541402844395648 50.05205886047388 14.9354498043722 7 21.520732824995697 16.349087457955143 48.85968299457081 13.270496722478356 8 22.086820594652686 18.22869610930965 46.34876179931054 13.33572149672713 9 81.99507790220005 3.3323253422904964 10.096906708102853 4.575690047406594 10 84.19867038227673 3.350376135734523 9.353939771759814 3.097013710228938 11 77.63041465649991 6.872886126476513 9.715700003256586 5.780999213766987 12 43.38238372823321 25.971369952872543 15.762064489716165 14.884181829178084 13 37.887684985740805 21.481281606334527 27.04697393335163 13.584059474573037 14 33.03192850397071 25.900748549655965 24.09297089076944 16.974352055603887 15 19.512721622338322 36.058599946964165 29.83572847512666 14.592949955570855 16 13.470823311576236 41.065648130486764 29.051356368254794 16.412172189682202 17 14.31148784130189 25.6300796933226 43.31929899650615 16.739133468869362 18 15.871671884958758 23.70022656537132 40.95008583431419 19.478015715355735 19 16.80556783236954 21.53738793853426 29.280433963405272 32.37661026569093 20 19.332027597243997 23.373544422165256 35.58974454405464 21.704683436536108 21 25.17322713760008 25.50977208547144 29.615118004736008 19.701882772192473 22 25.414307579937567 25.070784232538877 27.55007001660859 21.96483817091496 23 20.62135669391344 28.645120470437174 29.563477848233767 21.170044987415622 24 26.130105280787536 22.13213366891681 27.149230747758768 24.58853030253688 25 21.438108574592114 28.417996827154347 25.009560407352442 25.134334190901097 26 20.69151287049486 23.64067755607144 35.42924135492605 20.238568218507645 27 21.960092859236376 26.736946903684128 31.309473409971666 19.993486827107827 28 19.5219331097144 33.980246477071304 25.45301443598249 21.04480597723181 29 17.471214101949766 35.37992733159959 26.219149658756262 20.929708907694383 30 16.9492298173055 30.18250840897143 34.21016148016506 18.658100293558007 31 19.405533405598536 25.31400471739808 32.502965819799115 22.777496057204267 32 20.010886303262634 34.01988378638654 27.936394214441567 18.032835695909263 33 24.309022140135568 27.731787540300257 26.949741566604175 21.009448752960004 34 29.15203141210241 25.373646772024994 26.06497355186579 19.409348264006812 35 25.03924186667535 29.08857449906722 24.7380541430758 21.134129491181632 36 19.788787107639486 26.049341936924574 28.02060023540468 26.14127072003126 37 21.006750438476104 27.446417522295985 30.44340750596653 21.10342453326138 38 27.579565385277437 28.080428380685653 23.829838705925592 20.51016752811132 39 21.64532051789029 30.762832113664174 27.577983614717912 20.01386375372763 40 20.659877459304298 29.421490679184366 30.00562924228538 19.913002619225956 41 20.59939799673411 29.418513228719373 26.38328161563906 23.598807158907462 42 24.678505133775918 23.61341527525134 27.437671261555067 24.270408329417677 43 20.35785232776147 25.570716774676782 27.233715904702976 26.837714992858768 44 19.573573266216638 25.823893109528306 26.44478457680659 28.157749047448466 45 18.861962605083065 25.460737198126065 28.60008653215414 27.07721366463673 46 21.926038269543007 28.575894747126064 27.84418629535378 21.653880687977146 47 17.030179251822524 33.631977817994034 26.084233934561222 23.25360899562222 48 19.671456950253315 29.848475684929916 26.179698440095095 24.300368924721678 49 21.54306370348315 26.872979171803546 28.68820045685256 22.89575666786075 50 20.365109863269893 23.73530465366203 34.06966303634816 21.82992244671992 51 20.065503910229868 23.372427878240885 29.6291678491177 26.932900362411548 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 813.0 1 905.0 2 997.0 3 3246.0 4 5495.0 5 3717.0 6 1939.0 7 2097.5 8 2256.0 9 2702.5 10 3149.0 11 3217.5 12 3286.0 13 3349.5 14 3413.0 15 3298.5 16 3184.0 17 3102.5 18 3021.0 19 3119.0 20 3217.0 21 3786.0 22 4355.0 23 5353.5 24 6352.0 25 6723.5 26 9497.5 27 11900.0 28 14428.5 29 16957.0 30 20481.5 31 24006.0 32 27010.0 33 30014.0 34 31338.0 35 32662.0 36 41210.5 37 49759.0 38 58755.0 39 67751.0 40 81505.5 41 95260.0 42 103221.5 43 111183.0 44 122650.5 45 134118.0 46 133407.0 47 132696.0 48 118114.0 49 103532.0 50 84278.5 51 65025.0 52 52795.0 53 40565.0 54 35816.0 55 31067.0 56 29381.5 57 27696.0 58 24355.5 59 21015.0 60 16774.5 61 12534.0 62 9611.5 63 6689.0 64 5380.0 65 4071.0 66 3980.0 67 3889.0 68 2743.0 69 1597.0 70 1215.5 71 834.0 72 791.5 73 749.0 74 597.5 75 235.0 76 24.0 77 63.5 78 103.0 79 57.0 80 11.0 81 8.5 82 6.0 83 6.5 84 7.0 85 3.5 86 0.0 87 3.5 88 7.0 89 3.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1074745.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 16.013856331738328 #Duplication Level Percentage of deduplicated Percentage of total 1 69.22930621053521 11.08628163601431 2 11.863020140775598 3.7994540038979716 3 5.439318270969585 2.6131338400171877 4 3.0517698485913307 1.954824156514896 5 2.009545254326905 1.609028449745881 6 1.313030798888993 1.2616011943533563 7 0.9323698037284396 1.0451585259470806 8 0.6803273197759367 0.871573116595876 9 0.5084912258821309 0.7328614893503351 >10 3.012683349670931 9.367505916865616 >50 0.5509607968851764 6.425576623300194 >100 1.352040304737273 50.72230044153102 >500 0.04664218386329532 4.452023999672289 >1k 0.009911464070950256 3.3328558995952875 >5k 5.830272982911915E-4 0.7258207065986992 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source ACTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTCTGC 7774 0.7233343723394852 Illumina Single End Adapter 2 (95% over 21bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3805 0.3540374693531954 No Hit ATCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTCTG 3579 0.3330092254441751 No Hit ATGCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTCT 2845 0.2647139554033747 No Hit CTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTCTGCT 2637 0.24536052738091363 Illumina Single End Adapter 2 (95% over 22bp) ATGCCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTC 2626 0.2443370287835719 No Hit ATATCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTC 2404 0.22368096618267588 No Hit ATGTCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTC 2356 0.21921479048518486 No Hit ATTGCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTC 2234 0.20786326058739515 No Hit CCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTCTGC 2063 0.19195250966508334 Illumina Single End Adapter 2 (95% over 21bp) ATTTCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTC 1650 0.15352478960125426 No Hit ATGGCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTC 1614 0.15017515782813598 No Hit ATAGCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTC 1517 0.14114976110612285 No Hit ATGGTCTGGGGTGTCCTCCAGCCTCCACATGTATGGCATGGTACACACACA 1410 0.13119391111379908 No Hit ATTTTTTTGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGAAG 1409 0.13110086578676802 No Hit ATTGGTCTGGGAGATGGAGAAACTAGGGGCCAGGGAGAGAAAGGAGCCACA 1330 0.12375028495131403 No Hit ATTTGTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTT 1130 0.10514121954510139 No Hit ATACCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTC 1088 0.10123331580979675 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.28564915398536395 0.0 2 0.0 0.0 0.0 1.3795830638895739 0.0 3 0.0 0.0 0.0 1.8914254078874524 0.0 4 0.0 0.0 0.0 2.4509069593252355 0.0 5 0.0 0.0 0.0 4.69516024731448 0.0 6 0.0 0.0 0.0 5.181135990397722 0.0 7 0.0 0.0 0.0 5.941502402895571 0.0 8 0.0 0.0 0.0 8.249770875882186 0.0 9 0.0 0.0 0.0 8.522579774737263 0.0 10 0.0 0.0 0.0 9.068662799082572 0.0 11 0.0 0.0 0.0 9.458243583361634 0.0 12 0.0 0.0 0.0 10.57711364091017 0.0 13 0.0 0.0 0.0 11.636713825139918 0.0 14 0.0 0.0 0.0 12.059418745842036 0.0 15 0.0 0.0 0.0 12.296591284444217 0.0 16 0.0 0.0 0.0 12.416340620333195 0.0 17 0.0 0.0 0.0 12.624110835593559 0.0 18 0.0 0.0 0.0 13.10980744269571 0.0 19 0.0 0.0 0.0 13.813974477666795 0.0 20 0.0 0.0 0.0 14.605976301355206 0.0 21 9.304532703106319E-5 0.0 0.0 15.05612959353149 0.0 22 1.8609065406212637E-4 0.0 0.0 15.533079939892719 0.0 23 1.8609065406212637E-4 0.0 0.0 16.241340969253173 0.0 24 1.8609065406212637E-4 0.0 0.0 16.843809461779305 0.0 25 1.8609065406212637E-4 0.0 0.0 17.47242369120117 0.0 26 2.7913598109318956E-4 0.0 0.0 17.923972663282917 0.0 27 2.7913598109318956E-4 0.0 0.0 18.346677583985038 0.0 28 2.7913598109318956E-4 0.0 0.0 18.728907787428646 0.0 29 3.7218130812425275E-4 0.0 0.0 19.09587855723916 0.0 30 3.7218130812425275E-4 0.0 0.0 19.495601282164607 0.0 31 3.7218130812425275E-4 0.0 0.0 19.911420848666427 0.0 32 3.7218130812425275E-4 0.0 0.0 20.430706818826792 0.0 33 3.7218130812425275E-4 0.0 0.0 20.86113450167249 0.0 34 3.7218130812425275E-4 0.0 0.0 21.2679286714523 0.0 35 3.7218130812425275E-4 0.0 0.0 21.642901339387482 0.0 36 3.7218130812425275E-4 0.0 0.0 22.045322378796833 0.0 37 3.7218130812425275E-4 0.0 0.0 22.51883004805791 0.0 38 3.7218130812425275E-4 0.0 0.0 22.936789657081448 0.0 39 3.7218130812425275E-4 0.0 0.0 23.393549167476937 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGCCCT 45 3.8562575E-10 45.000004 35 CTCCGTA 30 2.1653686E-6 45.000004 43 CCTAGTT 30 2.1653686E-6 45.000004 15 CCCTATG 45 3.8562575E-10 45.000004 25 CATGCCA 30 2.1653686E-6 45.000004 38 TCCGACA 60 0.0 45.000004 21 GCGCGAG 90 0.0 45.000004 3 GATCCTA 60 0.0 45.000004 28 CCGGAAT 60 0.0 45.000004 36 CGCGCCC 30 2.1653686E-6 45.000004 38 ATAGACG 30 2.1653686E-6 45.000004 30 TGCGGTC 30 2.1653686E-6 45.000004 3 TGAGTAA 30 2.1653686E-6 45.000004 32 GCGTTAC 30 2.1653686E-6 45.000004 38 CCGTCAC 30 2.1653686E-6 45.000004 30 ATCGTCC 30 2.1653686E-6 45.000004 34 AAACGAT 30 2.1653686E-6 45.000004 38 AGACGAT 45 3.8562575E-10 45.000004 20 ACTAGAC 30 2.1653686E-6 45.000004 27 CCCCGAA 30 2.1653686E-6 45.000004 17 >>END_MODULE