##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545633_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1146460 Sequences flagged as poor quality 0 Sequence length 52 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.571067459832875 33.0 31.0 34.0 31.0 34.0 2 32.933916577987894 34.0 31.0 34.0 31.0 34.0 3 32.98293442422762 34.0 33.0 34.0 31.0 34.0 4 36.381605114875356 37.0 37.0 37.0 35.0 37.0 5 36.34287109886084 37.0 37.0 37.0 35.0 37.0 6 36.3478743261867 37.0 37.0 37.0 35.0 37.0 7 36.47678069884689 37.0 37.0 37.0 35.0 37.0 8 36.54690525617989 37.0 37.0 37.0 35.0 37.0 9 38.341620292029376 39.0 39.0 39.0 37.0 39.0 10 38.08184323918846 39.0 39.0 39.0 35.0 39.0 11 37.8704211224116 39.0 38.0 39.0 35.0 39.0 12 37.394290249986916 39.0 37.0 39.0 35.0 39.0 13 37.24281614709628 39.0 37.0 39.0 35.0 39.0 14 38.550358494845 40.0 37.0 41.0 35.0 41.0 15 38.64422134221866 40.0 37.0 41.0 35.0 41.0 16 38.73595328227762 41.0 37.0 41.0 35.0 41.0 17 38.71319452924655 40.0 37.0 41.0 35.0 41.0 18 38.727313643738114 40.0 37.0 41.0 35.0 41.0 19 38.7193569771296 40.0 37.0 41.0 35.0 41.0 20 38.607572876506815 40.0 36.0 41.0 35.0 41.0 21 38.57590147061389 40.0 36.0 41.0 35.0 41.0 22 38.65037419534916 40.0 37.0 41.0 35.0 41.0 23 38.65356139769377 40.0 37.0 41.0 35.0 41.0 24 38.630593304607224 40.0 36.0 41.0 35.0 41.0 25 38.581947036965964 40.0 36.0 41.0 35.0 41.0 26 38.489793800045355 40.0 36.0 41.0 35.0 41.0 27 38.44537184027354 40.0 36.0 41.0 35.0 41.0 28 38.4386999982555 40.0 36.0 41.0 35.0 41.0 29 38.416426216352946 40.0 36.0 41.0 35.0 41.0 30 38.410692915583624 40.0 36.0 41.0 35.0 41.0 31 38.35063063691712 40.0 36.0 41.0 35.0 41.0 32 38.2920101878827 40.0 35.0 41.0 35.0 41.0 33 38.2370924410795 40.0 36.0 41.0 35.0 41.0 34 38.16918165483314 40.0 35.0 41.0 35.0 41.0 35 38.13785042653036 40.0 35.0 41.0 34.0 41.0 36 38.04214713116899 40.0 35.0 41.0 34.0 41.0 37 37.956811402055024 40.0 35.0 41.0 34.0 41.0 38 37.84974617518274 40.0 35.0 41.0 34.0 41.0 39 37.83947804546168 40.0 35.0 41.0 34.0 41.0 40 37.75925980845385 40.0 35.0 41.0 34.0 41.0 41 37.656400572196155 40.0 35.0 41.0 34.0 41.0 42 37.653564886694696 40.0 35.0 41.0 34.0 41.0 43 37.56968319871605 40.0 35.0 41.0 33.0 41.0 44 37.474924550355006 40.0 35.0 41.0 33.0 41.0 45 37.352485913158766 39.0 35.0 41.0 33.0 41.0 46 37.397578633358336 39.0 35.0 41.0 33.0 41.0 47 37.39679796940146 39.0 35.0 41.0 33.0 41.0 48 37.313564363344554 39.0 35.0 41.0 33.0 41.0 49 37.326748425588335 39.0 35.0 41.0 33.0 41.0 50 37.20841808698079 39.0 35.0 41.0 33.0 41.0 51 37.08525373759224 39.0 35.0 41.0 33.0 41.0 52 36.726715280079546 38.0 35.0 40.0 32.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 6.0 12 7.0 13 11.0 14 13.0 15 12.0 16 25.0 17 47.0 18 77.0 19 173.0 20 339.0 21 497.0 22 809.0 23 1286.0 24 2126.0 25 2930.0 26 3738.0 27 4736.0 28 6073.0 29 8250.0 30 10654.0 31 13907.0 32 18215.0 33 25423.0 34 56758.0 35 158207.0 36 57097.0 37 73761.0 38 136021.0 39 564309.0 40 953.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.347417267065573 13.070844163773703 48.34961533764807 13.232123231512658 2 24.116846640964358 12.972367112677286 51.182945763480625 11.72784048287773 3 23.25192331175968 14.648221481778693 46.806343003680894 15.293512202780734 4 21.06527920729899 13.736283865115222 51.499659822409846 13.698777105175933 5 22.50518988887532 16.88100762346702 46.498002546970675 14.115799940686985 6 21.72845105803953 18.8714826509429 46.180852362925876 13.219213928091692 7 83.65647296896533 1.974687298292134 7.980653489873175 6.388186242869355 8 86.6722781431537 1.727840482877728 7.888282190394781 3.7115991835737834 9 77.73999965109991 4.050293948327896 9.941210334420738 8.268496066151458 10 41.00247719065646 28.270415016659978 13.738551715716204 16.98855607696736 11 32.87319226139595 21.01006576766743 31.862167018474256 14.254574952462363 12 30.433508364879717 26.969802696997714 24.543551454041136 18.053137484081432 13 19.077682605585892 31.834952811262497 34.80112694729864 14.286237635852975 14 14.152521675418244 40.864923329204686 28.16836173961586 16.81419325576121 15 12.691153638155713 25.82532316871064 41.41731940058964 20.066203792544005 16 16.013729218638243 25.148893114456676 40.38387732672749 18.45350034017759 17 16.177188911955064 23.81609476126511 27.501003087765817 32.50571323901401 18 17.786490588420005 25.0 33.700434380615114 23.513075030964885 19 22.00887950735307 26.619158104076895 30.522303438410407 20.849658950159622 20 22.921689374247684 23.971180852362924 26.91676988294402 26.190359890445368 21 19.66549203635539 29.952898487518098 31.748861713448356 18.632747762678157 22 26.744936587408198 21.009978542644316 26.37510248940216 25.86998238054533 23 21.393245294210004 29.507178619402335 22.634719048200548 26.464857038187116 24 20.583012054498194 21.731416708825428 34.503166268339065 23.182404968337316 25 24.488076339340232 25.32657048654118 28.387470997679813 21.797882176438776 26 17.109711634073584 32.6893219126703 25.368700172705545 24.832266280550563 27 16.858503567503448 33.207613000017446 24.838720932261047 25.09516250021806 28 18.0117928231251 26.81279765539138 31.56499136472271 23.61041815676081 29 15.546464769813165 27.656438078956093 29.477522111543358 27.31957503968739 30 21.160703382586394 32.59834621356175 24.352528653420094 21.888421750431764 31 21.485703818711514 26.94974094168135 22.288871831551035 29.275683408056103 32 26.077665160581265 30.67442387872233 22.168588524675958 21.079322436020444 33 24.8420354831394 30.281649599637145 22.365280951799452 22.511033965424 34 17.03164523838599 30.53905064284842 24.000488460129443 28.428815658636147 35 20.8435531985416 26.95924846920084 29.01985241526089 23.177345916996668 36 22.725433072239763 29.645081380946564 23.39532124976013 24.23416429705354 37 23.588088550843466 32.11982973675488 24.68843221743454 19.603649494967115 38 18.64522094098355 27.56807913054097 30.556408422448232 23.23029150602725 39 20.67974460513232 29.898033947979 24.64682588140886 24.775395565479823 40 25.39399542940879 25.534863841738918 26.627008356157216 22.444132372695076 41 19.122254592397468 27.2946286830766 27.398252010536783 26.184864713989146 42 18.876977827399124 29.944699335345327 23.213282626519895 27.965040210735655 43 19.350260802819115 24.62597910088446 27.23924079339881 28.784519302897614 44 25.44441149276905 25.59609580796539 24.286063185806743 24.67342951345882 45 17.793119690176717 28.577708773092823 26.21330007152452 27.41587146520594 46 19.765539137867872 27.254592397466986 25.0327966086911 27.94707185597404 47 21.218708022957625 25.87617535718647 29.115974390733214 23.78914222912269 48 18.941175444411492 24.805313748408143 33.92678331559758 22.326727491582783 49 19.725502852258256 22.531095720740364 27.084939727509028 30.65846169949235 50 18.736632765207684 24.848839034942344 30.743767772098458 25.670760427751517 51 21.916682657920905 26.20667096976781 26.030040297960678 25.84660607435061 52 19.759433386249846 23.00376812099855 28.883606929155835 28.353191563595765 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 597.0 1 472.0 2 347.0 3 265.5 4 184.0 5 203.5 6 223.0 7 386.5 8 550.0 9 660.5 10 771.0 11 931.5 12 1092.0 13 1136.0 14 1237.0 15 1294.0 16 1433.0 17 1572.0 18 1454.0 19 1336.0 20 1739.0 21 2142.0 22 3370.0 23 4598.0 24 3859.5 25 3121.0 26 5069.0 27 7017.0 28 9072.5 29 11128.0 30 13223.0 31 15318.0 32 19321.5 33 23325.0 34 24253.5 35 25182.0 36 27612.0 37 30042.0 38 36282.0 39 52153.0 40 61784.0 41 75170.5 42 88557.0 43 97828.5 44 107100.0 45 117150.5 46 127201.0 47 144147.0 48 161093.0 49 155212.0 50 149331.0 51 123580.5 52 97830.0 53 78356.5 54 58883.0 55 48555.5 56 38228.0 57 32142.0 58 26056.0 59 23314.0 60 20572.0 61 16646.5 62 12721.0 63 11338.5 64 7692.5 65 5429.0 66 4598.0 67 3767.0 68 2660.5 69 1554.0 70 1261.0 71 968.0 72 759.0 73 550.0 74 586.5 75 623.0 76 507.5 77 392.0 78 213.5 79 35.0 80 104.5 81 174.0 82 117.5 83 61.0 84 34.5 85 8.0 86 12.0 87 16.0 88 11.5 89 6.5 90 6.0 91 4.5 92 3.0 93 3.5 94 4.0 95 3.5 96 3.0 97 4.0 98 5.0 99 3.5 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 1146460.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 16.55283349747807 #Duplication Level Percentage of deduplicated Percentage of total 1 62.65803889168862 10.371680850526271 2 12.7409158927496 4.217965187561125 3 6.394978869144576 3.1756506132252227 4 3.899072016846479 2.5816275955814314 5 2.605401050113629 2.1563384888342707 6 1.8002198575116208 1.7879243736146133 7 1.298738013434428 1.5048455865257866 8 1.040171555443589 1.3774229252856407 9 0.7630402937630049 1.1367431041073197 >10 4.700318523323604 14.887114716033647 >50 0.7879555084836358 9.42519498834601 >100 1.2868885145185733 40.211231941320044 >500 0.014767573117426252 1.5731793304007535 >1k 0.00685637323309076 2.6655873748682692 >5k 0.0026370666281118308 2.9274929237696155 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTCTGCTT 8632 0.7529263995254959 Illumina Single End Adapter 2 (95% over 21bp) GTCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTCTGC 6604 0.576034052649024 No Hit TTCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTCTGC 6381 0.5565828724944613 No Hit TGCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTCTGC 6378 0.5563211974251173 No Hit GCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTCTGCT 5538 0.48305217800882716 No Hit ATCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTCTGC 4346 0.37907995045618686 No Hit GCCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTCTGC 4055 0.3536974687298292 No Hit GGCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTCTGC 3529 0.3078171065715332 No Hit ACCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTCTGC 2726 0.23777541301048447 No Hit CTCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTCTGC 2708 0.23620536259442107 No Hit AGCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTCTGC 2440 0.21282905639969993 No Hit TCCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTCTGC 2394 0.20881670533642693 No Hit CCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTCTGCT 2285 0.19930917781693214 No Hit TCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTCTGCT 1425 0.12429565793834936 No Hit TACTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTCTGC 1273 0.11103745442492544 No Hit CGCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTCTGC 1228 0.10711232838476702 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.7804895068297193 0.0 2 0.0 0.0 0.0 1.663293965772901 0.0 3 0.0 0.0 0.0 5.910105891178061 0.0 4 0.0 0.0 0.0 6.748076688240323 0.0 5 0.0 0.0 0.0 8.055667009751758 0.0 6 0.0 0.0 0.0 12.103256982363101 0.0 7 0.0 0.0 0.0 12.640475899726113 0.0 8 0.0 0.0 0.0 13.721193936116393 0.0 9 0.0 0.0 0.0 14.383580761648902 0.0 10 0.0 0.0 0.0 16.523210578650804 0.0 11 0.0 0.0 0.0 18.415906355215185 0.0 12 0.0 0.0 0.0 19.229018020689775 0.0 13 8.722502311463112E-5 0.0 0.0 19.59658426809483 0.0 14 8.722502311463112E-5 0.0 0.0 19.78568811820735 0.0 15 8.722502311463112E-5 0.0 0.0 20.110426879263123 0.0 16 8.722502311463112E-5 0.0 0.0 20.93435444760393 0.0 17 8.722502311463112E-5 0.0 0.0 22.096017305444587 0.0 18 8.722502311463112E-5 0.0 0.0 23.421750431763865 0.0 19 4.3612511557315564E-4 0.0 0.0 24.20555448947194 0.0 20 4.3612511557315564E-4 0.0 0.0 24.99171362280411 0.0 21 4.3612511557315564E-4 0.0 0.0 26.21129389599288 0.0 22 5.233501386877867E-4 0.0 0.0 27.17818327721857 0.0 23 5.233501386877867E-4 0.0 0.0 28.246951485442143 0.0 24 7.850252080316802E-4 0.0 0.0 29.048026097726915 0.0 25 7.850252080316802E-4 0.0 0.0 29.767806988468852 0.0 26 9.594752542609424E-4 0.0 0.0 30.415540010118104 0.0 27 9.594752542609424E-4 0.0 0.0 31.00858294227448 0.0 28 9.594752542609424E-4 0.0 0.0 31.612877902412645 0.0 29 9.594752542609424E-4 0.0 0.0 32.24979502119568 0.0 30 9.594752542609424E-4 0.0 0.0 32.96477853566631 0.0 31 9.594752542609424E-4 0.0 0.0 33.66510824625369 0.0 32 9.594752542609424E-4 0.0 0.0 34.28911606161576 0.0 33 9.594752542609424E-4 0.0 0.0 34.89768504788654 0.0 34 9.594752542609424E-4 0.0 0.0 35.5192505626014 0.0 35 9.594752542609424E-4 0.0 0.0 36.2441777297071 0.0 36 9.594752542609424E-4 0.0 0.0 36.82684088411283 0.0 37 9.594752542609424E-4 0.0 0.0 37.488093784344855 0.0 38 9.594752542609424E-4 0.0 0.0 38.09456937006088 0.0 39 0.0011339253004902046 0.0 0.0 38.706801807302476 0.0 40 0.0011339253004902046 0.0 0.0 39.31676639394309 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AACCGTT 35 1.01956175E-7 46.000004 44 AAGTACG 35 1.01956175E-7 46.000004 17 GCGACTT 35 1.01956175E-7 46.000004 9 TCCGCCG 55 1.8189894E-12 46.000004 16 CGTATAA 35 1.01956175E-7 46.000004 26 CTCCGGT 55 1.8189894E-12 46.000004 21 CGACGTC 35 1.01956175E-7 46.000004 46 GACGTTC 35 1.01956175E-7 46.000004 9 TAGCGTA 35 1.01956175E-7 46.000004 18 GATCCGC 35 1.01956175E-7 46.000004 9 GCCGGAT 55 1.8189894E-12 46.000004 19 GCTGCGA 35 1.01956175E-7 46.000004 13 ATTCGGC 70 0.0 46.000004 10 ATTCGAC 35 1.01956175E-7 46.000004 44 TACGGTA 35 1.01956175E-7 46.000004 20 ATGTCGC 75 0.0 46.000004 32 TACATTA 150 0.0 46.000004 22 AGACGTT 35 1.01956175E-7 46.000004 8 TCAATCG 35 1.01956175E-7 46.000004 33 TCGTGCA 35 1.01956175E-7 46.000004 13 >>END_MODULE