SRR1545630_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545630_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1839667
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ACTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTCTGC	8850	0.481065323235129	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4379	0.23803220909001466	No Hit
ATCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTCTG	4281	0.2327051580530607	No Hit
ATGCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTCT	3688	0.20047106351312494	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	3625	0.19704653070365452	No Hit
CTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTCTGCT	3164	0.17198764776451392	No Hit
ATTGCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTC	2973	0.1616053340088179	No Hit
ATGCCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTC	2839	0.15432140708073797	No Hit
ATATCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTC	2757	0.1498640786620622	No Hit
ATGTCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTC	2473	0.13442650218762417	No Hit
AGCTACCATTACATTTATTATTTTACTTCTACTCACAATTCTAGAATTTGC	2312	0.1256749183411998	No Hit
CCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTCTGC	2312	0.1256749183411998	No Hit
ATGGCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTC	2096	0.11393366299444412	No Hit
ATACCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTC	2079	0.11300958271252351	No Hit
ATTTCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTC	2043	0.11105270682139758	No Hit
ATAGCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTC	1928	0.104801575502523	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTGCC	85	0.0	45.000004	22
ATCGAAT	125	0.0	45.000004	1
TCACGGT	40	6.8193913E-9	45.0	41
CTATGCG	50	2.1827873E-11	45.0	3
AACCGGC	45	3.8562575E-10	45.0	45
AAATCGG	20	7.0343935E-4	45.0	7
GTCGACA	35	1.2124656E-7	45.0	35
CGAAATC	25	3.891722E-5	45.0	42
CGAAATA	25	3.891722E-5	45.0	36
GGTCGCT	45	3.8562575E-10	45.0	33
GGTCGAC	20	7.0343935E-4	45.0	11
CGAGTAC	40	6.8193913E-9	45.0	27
CACGGCA	35	1.2124656E-7	45.0	23
CGACGAA	40	6.8193913E-9	45.0	5
GCGCGTT	25	3.891722E-5	45.0	24
AACCCAC	20	7.0343935E-4	45.0	28
TAGCGAG	50	2.1827873E-11	45.0	28
CACGCTA	50	2.1827873E-11	45.0	36
ATTGTCG	145	0.0	45.0	1
GTCTAAT	20	7.0343935E-4	45.0	31