##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545630_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1839667 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.013037685624624 31.0 31.0 34.0 31.0 34.0 2 32.67428507441836 34.0 31.0 34.0 31.0 34.0 3 32.61431933061799 34.0 31.0 34.0 31.0 34.0 4 36.04576371702053 37.0 35.0 37.0 35.0 37.0 5 35.816727701263325 37.0 35.0 37.0 35.0 37.0 6 35.80858546682634 37.0 35.0 37.0 35.0 37.0 7 35.78089512939027 37.0 35.0 37.0 35.0 37.0 8 35.75748165292958 37.0 35.0 37.0 33.0 37.0 9 37.98036927335219 39.0 38.0 39.0 35.0 39.0 10 37.95574362099228 39.0 39.0 39.0 35.0 39.0 11 37.7755724269664 39.0 38.0 39.0 35.0 39.0 12 37.205035476529176 39.0 37.0 39.0 33.0 39.0 13 36.956245885804336 39.0 37.0 39.0 33.0 39.0 14 37.686947692163855 40.0 36.0 41.0 33.0 41.0 15 37.58006258741392 40.0 36.0 41.0 33.0 41.0 16 37.624243952845816 40.0 36.0 41.0 33.0 41.0 17 37.71446680295945 40.0 35.0 41.0 33.0 41.0 18 37.79727037556253 40.0 35.0 41.0 33.0 41.0 19 37.788701433465945 40.0 35.0 41.0 33.0 41.0 20 37.755914521486766 40.0 36.0 41.0 33.0 41.0 21 37.72585690779908 40.0 36.0 41.0 33.0 41.0 22 37.64502651838621 40.0 35.0 41.0 33.0 41.0 23 37.58686273113558 40.0 35.0 41.0 33.0 41.0 24 37.56776199170828 40.0 35.0 41.0 33.0 41.0 25 37.54137569462299 40.0 35.0 41.0 33.0 41.0 26 37.44513110253106 39.0 35.0 41.0 33.0 41.0 27 37.339697347400374 39.0 35.0 41.0 32.0 41.0 28 37.273856083736895 39.0 35.0 41.0 32.0 41.0 29 37.21571893174145 39.0 35.0 41.0 32.0 41.0 30 37.19283326819473 39.0 35.0 41.0 32.0 41.0 31 37.16931325071331 39.0 35.0 41.0 32.0 41.0 32 37.05381843561906 39.0 35.0 41.0 31.0 41.0 33 36.936997837108564 39.0 35.0 41.0 31.0 41.0 34 36.892840932625305 39.0 35.0 41.0 31.0 41.0 35 36.78324446761289 39.0 35.0 41.0 31.0 41.0 36 36.73071757008198 39.0 35.0 41.0 31.0 41.0 37 36.62607852399375 39.0 35.0 41.0 31.0 41.0 38 36.50392217722012 39.0 35.0 41.0 30.0 41.0 39 36.456573390727776 39.0 35.0 41.0 30.0 41.0 40 36.432094504059705 38.0 35.0 41.0 30.0 41.0 41 36.3811885520586 38.0 35.0 41.0 30.0 41.0 42 36.29215015543574 38.0 35.0 41.0 30.0 41.0 43 36.22392259033836 38.0 35.0 40.0 30.0 41.0 44 36.148278465613615 38.0 35.0 40.0 30.0 41.0 45 36.13676877391397 38.0 35.0 40.0 30.0 41.0 46 36.054674568821426 38.0 35.0 40.0 30.0 41.0 47 35.948394464867825 38.0 35.0 40.0 30.0 41.0 48 35.909812482367734 38.0 35.0 40.0 30.0 41.0 49 35.90595308824912 38.0 35.0 40.0 30.0 41.0 50 35.82335226973142 38.0 35.0 40.0 29.0 41.0 51 35.67079639956579 37.0 34.0 40.0 29.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 3.0 10 8.0 11 12.0 12 10.0 13 26.0 14 15.0 15 37.0 16 57.0 17 170.0 18 307.0 19 643.0 20 1237.0 21 1952.0 22 3187.0 23 4932.0 24 7570.0 25 11240.0 26 15694.0 27 19142.0 28 22815.0 29 27703.0 30 34035.0 31 42590.0 32 53514.0 33 69266.0 34 111791.0 35 228191.0 36 124969.0 37 173513.0 38 267754.0 39 616888.0 40 395.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 1.547617041562413 92.33589557240522 3.2775496869813936 2.8389376990509696 2 3.0756109665499247 2.550407220437177 92.22152704810163 2.1524547649112584 3 25.65882847276165 15.299073147477232 45.103380122598274 13.938718257162847 4 25.069319610559955 15.405233664570817 46.43590388912776 13.089542835741469 5 23.485554722675353 14.234315232050148 48.52514069122292 13.754989354051576 6 21.065225391334412 13.627411917482894 51.015591408662544 14.291771282520152 7 21.458774876105295 16.71166575255196 47.85757422403076 13.971985147311985 8 23.725598165320136 19.259083301488804 45.21736814325636 11.7979503899347 9 84.30656200279725 3.6223403474650575 8.22426015142958 3.8468374983081177 10 85.44633349405083 3.4383940136992184 7.7948346086547184 3.3204378835952375 11 79.10295721997514 5.832903454810028 9.17209473236189 5.892044592852946 12 39.84210185865159 27.65500495470104 16.246146721118553 16.256746465528813 13 30.85183351117349 22.94377188915168 27.10718842051306 19.09720617916177 14 28.115251292761133 23.660477684276557 28.83364217545893 19.39062884750338 15 19.75330317932539 32.135163592106615 31.00756821750893 17.103965011059067 16 15.746273646263157 36.52383828160205 28.545383485163345 19.184504586971446 17 14.139895970303321 25.32898616977964 40.31169771485818 20.219420145058862 18 17.685320223714402 21.45540470095947 37.83086830388326 23.028406771442874 19 17.598402319550225 22.380028559516475 29.031123567471724 30.990445553461576 20 19.748302274270287 22.423242902112175 35.016500268798644 22.81195455481889 21 23.349443132914814 27.018259282794116 28.14672438001008 21.485573204280993 22 25.238045798505926 22.643826301172982 28.77085907395197 23.34726882636912 23 21.59097271408358 26.35607422430255 28.77792557022548 23.275027491388386 24 25.720252632677543 21.351581563402508 25.21766167464003 27.71050412927992 25 22.001536147574534 26.97085940009795 24.13665081778387 26.890953634543642 26 21.59396238558391 22.453520120760988 35.10129822408077 20.85121926957433 27 23.301499673582228 26.941125758085565 28.969645049892183 20.78772951844002 28 21.917336126592478 29.459842460619235 25.22282565268606 23.399995760102236 29 18.144370693174363 30.195084219046166 26.344441684283083 25.316103403496392 30 18.204707699817412 27.431921103112682 30.943263101419987 23.42010809564992 31 19.633988107630348 23.763050595569744 30.50503161713506 26.09792967966485 32 20.060695767223088 30.068757008741255 29.315903367294187 20.554643856741464 33 23.263558024359842 30.68310732322752 25.608221487910583 20.445113164502054 34 25.851308959719336 25.93659613397425 24.838245182416166 23.373849723890245 35 24.21791552492924 28.422535165331553 24.62907689272026 22.730472417018948 36 20.11325962796528 26.418748610482222 26.855240649530593 26.612751112021904 37 21.10854844925739 27.165785981919555 29.617044823873016 22.108620744950038 38 24.040600826127772 28.91648325484993 24.636578250302907 22.40633766871939 39 22.106990015040765 29.691840969044943 28.598436564878316 19.602732451035976 40 20.850023400974198 27.259118090393535 30.34043661162591 21.550421897006363 41 19.363178227363974 30.310376823631668 26.61758894408608 23.70885600491828 42 23.395918935329057 24.84221329186206 29.195555499989943 22.56631227281894 43 19.518043211081135 25.692312793565357 28.345673428941215 26.44397056641229 44 18.677238869860687 27.89885343380079 26.54839163826932 26.875516058069206 45 20.22599742235959 24.4852465147225 28.521194324842487 26.767561738075425 46 22.237937626755276 25.326377001924804 29.1837055293159 23.251979842004015 47 18.777420043953608 30.3069522908222 26.88698552509775 24.028642140126447 48 19.195865338672704 28.78254597163508 27.778940427805683 24.242648261886526 49 21.15246944148044 27.33494703117466 28.625724112026795 22.8868594153181 50 20.416847179408013 24.95103733447412 30.812315489705473 23.819799996412392 51 19.855658659964003 23.69200512918914 30.454913851256777 25.99742235959008 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1066.0 1 1307.0 2 1548.0 3 4249.5 4 6951.0 5 4849.5 6 2748.0 7 2825.5 8 2903.0 9 3062.0 10 3221.0 11 3467.5 12 3714.0 13 3609.0 14 3504.0 15 3859.0 16 4214.0 17 4039.0 18 3864.0 19 5028.0 20 6192.0 21 6627.0 22 7062.0 23 7311.0 24 7560.0 25 11494.5 26 18379.0 27 21329.0 28 24765.5 29 28202.0 30 33827.0 31 39452.0 32 50989.5 33 62527.0 34 73955.0 35 85383.0 36 86476.0 37 87569.0 38 101901.5 39 116234.0 40 128366.5 41 140499.0 42 148627.0 43 156755.0 44 169919.0 45 183083.0 46 190380.0 47 197677.0 48 182963.0 49 168249.0 50 140293.5 51 112338.0 52 95973.5 53 79609.0 54 73856.0 55 68103.0 56 64308.5 57 60514.0 58 55563.0 59 50612.0 60 45302.5 61 39993.0 62 33743.0 63 27493.0 64 22920.0 65 18347.0 66 14143.5 67 9940.0 68 9021.0 69 8102.0 70 5301.0 71 2500.0 72 2492.5 73 2485.0 74 1870.0 75 1170.5 76 1086.0 77 643.0 78 200.0 79 135.5 80 71.0 81 49.5 82 28.0 83 22.5 84 17.0 85 19.5 86 22.0 87 19.0 88 16.0 89 8.0 90 0.0 91 0.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1839667.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 14.784634611451963 #Duplication Level Percentage of deduplicated Percentage of total 1 68.95328036804622 10.194490555025675 2 12.09753056940475 3.577151383390393 3 5.484853805260663 2.432746782240324 4 3.1234775543147815 1.8471789743046259 5 1.9573042173144932 1.4469013838224376 6 1.2593954885959737 1.1171821278121494 7 0.9115145915646078 0.9433487125502722 8 0.6516258471248366 0.7707240042494853 9 0.5015957399232589 0.6674318763683645 >10 2.796286364265171 8.127926604197237 >50 0.5791561223275182 6.236417216007325 >100 1.6356548428164117 55.586835575078766 >500 0.038733369078872794 3.525614246777791 >1k 0.00922223073306495 3.0433810747895285 >5k 3.6888922932259803E-4 0.48266948338567306 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source ACTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTCTGC 8850 0.481065323235129 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4379 0.23803220909001466 No Hit ATCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTCTG 4281 0.2327051580530607 No Hit ATGCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTCT 3688 0.20047106351312494 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 3625 0.19704653070365452 No Hit CTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTCTGCT 3164 0.17198764776451392 No Hit ATTGCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTC 2973 0.1616053340088179 No Hit ATGCCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTC 2839 0.15432140708073797 No Hit ATATCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTC 2757 0.1498640786620622 No Hit ATGTCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTC 2473 0.13442650218762417 No Hit AGCTACCATTACATTTATTATTTTACTTCTACTCACAATTCTAGAATTTGC 2312 0.1256749183411998 No Hit CCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTCTGC 2312 0.1256749183411998 No Hit ATGGCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTC 2096 0.11393366299444412 No Hit ATACCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTC 2079 0.11300958271252351 No Hit ATTTCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTC 2043 0.11105270682139758 No Hit ATAGCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTC 1928 0.104801575502523 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.184489910402263 0.0 2 0.0 0.0 0.0 0.8474903338484628 0.0 3 0.0 0.0 0.0 1.1704835712115291 0.0 4 0.0 0.0 0.0 1.5782747638567198 0.0 5 0.0 0.0 0.0 3.0821882438506534 0.0 6 0.0 0.0 0.0 3.413933065060144 0.0 7 0.0 0.0 0.0 3.9456053731463356 0.0 8 0.0 0.0 0.0 5.589598552346702 0.0 9 0.0 0.0 0.0 5.7964838201696285 0.0 10 5.435766364238745E-5 0.0 0.0 6.213461457970383 0.0 11 5.435766364238745E-5 0.0 0.0 6.543358118616032 0.0 12 5.435766364238745E-5 0.0 0.0 7.421832320740656 0.0 13 1.087153272847749E-4 0.0 0.0 8.205724188127526 0.0 14 1.6307299092716237E-4 0.0 0.0 8.551167140574897 0.0 15 1.6307299092716237E-4 0.0 0.0 8.733971963404246 0.0 16 1.6307299092716237E-4 0.0 0.0 8.83513157544273 0.0 17 2.174306545695498E-4 0.0 0.0 8.987278675977771 0.0 18 2.174306545695498E-4 0.0 0.0 9.354464693882099 0.0 19 2.174306545695498E-4 0.0 0.0 9.937070132801209 0.0 20 2.717883182119373E-4 0.0 0.0 10.598602899329064 0.0 21 2.717883182119373E-4 0.0 0.0 10.992261099427234 0.0 22 2.717883182119373E-4 0.0 0.0 11.383962423634276 0.0 23 3.2614598185432475E-4 0.0 0.0 12.015815905813389 0.0 24 3.2614598185432475E-4 0.0 0.0 12.544770330717462 0.0 25 3.2614598185432475E-4 0.0 0.0 13.143628711065643 0.0 26 3.8050364549671215E-4 0.0 0.0 13.569575363367392 0.0 27 3.8050364549671215E-4 0.0 0.0 13.95111180447331 0.0 28 3.8050364549671215E-4 0.0 0.0 14.280247457827965 0.0 29 3.8050364549671215E-4 0.0 0.0 14.60003359303613 0.0 30 3.8050364549671215E-4 0.0 0.0 14.96678474963132 0.0 31 3.8050364549671215E-4 0.0 0.0 15.357888139538296 0.0 32 4.348613091390996E-4 0.0 0.0 15.81721039731647 0.0 33 5.435766364238746E-4 0.0 0.0 16.18330926194795 0.0 34 5.97934300066262E-4 0.0 0.0 16.537829944223603 0.0 35 5.97934300066262E-4 0.0 0.0 16.927411319548593 0.0 36 5.97934300066262E-4 0.0 0.0 17.285900111270138 0.0 37 5.97934300066262E-4 0.0 0.0 17.787186485380236 0.0 38 5.97934300066262E-4 0.0 0.0 18.169755722095356 0.0 39 5.97934300066262E-4 0.0 0.0 18.54281236767306 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTGCC 85 0.0 45.000004 22 ATCGAAT 125 0.0 45.000004 1 TCACGGT 40 6.8193913E-9 45.0 41 CTATGCG 50 2.1827873E-11 45.0 3 AACCGGC 45 3.8562575E-10 45.0 45 AAATCGG 20 7.0343935E-4 45.0 7 GTCGACA 35 1.2124656E-7 45.0 35 CGAAATC 25 3.891722E-5 45.0 42 CGAAATA 25 3.891722E-5 45.0 36 GGTCGCT 45 3.8562575E-10 45.0 33 GGTCGAC 20 7.0343935E-4 45.0 11 CGAGTAC 40 6.8193913E-9 45.0 27 CACGGCA 35 1.2124656E-7 45.0 23 CGACGAA 40 6.8193913E-9 45.0 5 GCGCGTT 25 3.891722E-5 45.0 24 AACCCAC 20 7.0343935E-4 45.0 28 TAGCGAG 50 2.1827873E-11 45.0 28 CACGCTA 50 2.1827873E-11 45.0 36 ATTGTCG 145 0.0 45.0 1 GTCTAAT 20 7.0343935E-4 45.0 31 >>END_MODULE