SRR1545626_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545626_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1300804
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ACTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGC	7059	0.542664382950852	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3960	0.304427108157724	No Hit
ATCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTG	3444	0.2647593334583842	No Hit
ATGCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCT	2956	0.22724407366521016	No Hit
CTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGCT	2933	0.22547593642085972	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	2674	0.20556517353882675	No Hit
ATTGCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTC	2435	0.18719192130405504	No Hit
ATATCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTC	2340	0.17988874572956418	No Hit
CTACACAAAAATAAATAAAGGTAAAAACTCTCATACGCGCATGTCATCGGG	2240	0.17220119249325802	No Hit
ATGCCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTC	2119	0.16289925307732758	No Hit
CCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGC	1942	0.14929228384906565	No Hit
ATGTCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTC	1934	0.14867727959016117	No Hit
AGCTACCATTACATTTATTATTTTACTTCTACTCACAATTCTAGAATTTGC	1725	0.13261029332628127	No Hit
ACGCTCTGGGGCACTAGCATTATGTATGTGACATATTTCTTTACCAATTTT	1704	0.130995907146657	No Hit
ATGGCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTC	1494	0.11485204535041406	No Hit
ATTTCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTC	1426	0.10962450914972585	No Hit
ATACCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTC	1320	0.10147570271924133	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTAGGCA	65	0.0	45.000004	2
GCGACTA	55	1.8189894E-12	45.000004	11
ACGTTAG	65	0.0	45.000004	3
GATCATA	65	0.0	45.000004	24
CGTCTAG	65	0.0	45.000004	4
TAACGAA	65	0.0	45.000004	2
ATCGTAA	55	1.8189894E-12	45.000004	1
CGTTAGC	55	1.8189894E-12	45.000004	42
TGCGCGA	55	1.8189894E-12	45.000004	2
GTCAATC	55	1.8189894E-12	45.000004	39
GACGGAG	55	1.8189894E-12	45.000004	3
TCGTACT	65	0.0	45.000004	44
TCATCGG	260	0.0	45.000004	44
ATCGGCC	65	0.0	45.000004	1
CGACTAA	55	1.8189894E-12	45.000004	12
ATTGAGC	55	1.8189894E-12	45.000004	1
GGCTACG	65	0.0	45.000004	3
TGATCGA	35	1.2121018E-7	45.0	28
TCTGCGA	20	7.033629E-4	45.0	23
AACGTTC	25	3.8910912E-5	45.0	14