##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545622_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2857786 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.861619449461926 31.0 31.0 34.0 31.0 34.0 2 32.51694003679772 33.0 31.0 34.0 31.0 34.0 3 32.49979564600009 34.0 31.0 34.0 31.0 34.0 4 35.99006118722676 37.0 35.0 37.0 35.0 37.0 5 35.76762150839846 37.0 35.0 37.0 35.0 37.0 6 35.778359891188494 37.0 35.0 37.0 35.0 37.0 7 35.761898896558385 37.0 35.0 37.0 35.0 37.0 8 35.730749258341945 37.0 35.0 37.0 33.0 37.0 9 37.904182818447566 39.0 38.0 39.0 35.0 39.0 10 37.82684182790454 39.0 38.0 39.0 35.0 39.0 11 37.660962367371106 39.0 38.0 39.0 35.0 39.0 12 37.11900646164548 39.0 37.0 39.0 33.0 39.0 13 36.933411039175084 39.0 37.0 39.0 33.0 39.0 14 37.74299405203889 40.0 36.0 41.0 33.0 41.0 15 37.72456300086851 40.0 36.0 41.0 33.0 41.0 16 37.646192891980014 40.0 36.0 41.0 32.0 41.0 17 37.72180947068815 40.0 36.0 41.0 32.0 41.0 18 37.796664270872625 40.0 36.0 41.0 33.0 41.0 19 37.74101979644382 40.0 36.0 41.0 33.0 41.0 20 37.709420859364556 40.0 36.0 41.0 33.0 41.0 21 37.69532918140127 40.0 36.0 41.0 33.0 41.0 22 37.634867341361456 40.0 36.0 41.0 32.0 41.0 23 37.58936813323321 40.0 35.0 41.0 32.0 41.0 24 37.57899786758001 40.0 35.0 41.0 32.0 41.0 25 37.5232774602437 40.0 35.0 41.0 32.0 41.0 26 37.389237682597646 40.0 35.0 41.0 32.0 41.0 27 37.30119225162416 40.0 35.0 41.0 32.0 41.0 28 37.22977647731496 39.0 35.0 41.0 32.0 41.0 29 37.176869786611036 39.0 35.0 41.0 31.0 41.0 30 37.090732476119626 39.0 35.0 41.0 31.0 41.0 31 36.972987130596906 39.0 35.0 41.0 31.0 41.0 32 36.86193962738987 39.0 35.0 41.0 31.0 41.0 33 36.773385061022765 39.0 35.0 41.0 31.0 41.0 34 36.70289902742893 39.0 35.0 41.0 30.0 41.0 35 36.62836475509363 39.0 35.0 41.0 30.0 41.0 36 36.50709115378128 39.0 35.0 41.0 30.0 41.0 37 36.382116785511585 39.0 35.0 41.0 30.0 41.0 38 36.29978591818981 38.0 35.0 41.0 30.0 41.0 39 36.25359141657213 38.0 35.0 41.0 30.0 41.0 40 36.140309316372885 38.0 35.0 41.0 30.0 41.0 41 36.07039610383703 38.0 35.0 40.0 30.0 41.0 42 35.95436012353619 38.0 35.0 40.0 29.0 41.0 43 35.8404478151968 38.0 35.0 40.0 29.0 41.0 44 35.740631733796725 38.0 35.0 40.0 29.0 41.0 45 35.71833020387111 38.0 35.0 40.0 29.0 41.0 46 35.64806462065389 38.0 34.0 40.0 28.0 41.0 47 35.55867094317069 37.0 34.0 40.0 28.0 41.0 48 35.47313514727835 37.0 34.0 40.0 28.0 41.0 49 35.4147833322719 37.0 34.0 40.0 28.0 41.0 50 35.32347208643334 37.0 34.0 40.0 28.0 41.0 51 35.119478155467206 37.0 34.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 5.0 9 11.0 10 17.0 11 42.0 12 34.0 13 40.0 14 59.0 15 117.0 16 201.0 17 459.0 18 970.0 19 1678.0 20 2841.0 21 4598.0 22 7146.0 23 10181.0 24 14445.0 25 20187.0 26 26563.0 27 33431.0 28 39282.0 29 46986.0 30 57320.0 31 70144.0 32 87346.0 33 112056.0 34 179664.0 35 271491.0 36 220115.0 37 307047.0 38 462070.0 39 880794.0 40 444.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 2.4076330418022907 91.04047678867488 3.3816737852309444 3.170216384291896 2 3.3965454376219917 2.76280309302376 90.7832146983714 3.057436770982852 3 29.776477314956402 15.914837570062979 41.1356203718543 13.173064743126323 4 27.576767469642583 15.869592754670926 42.23290337345064 14.320736402235855 5 24.979512111823627 14.824308048258336 45.30584165504345 14.890338184874585 6 23.583186424735793 14.936422811225194 46.331985670025674 15.148405094013336 7 22.930793278433026 17.60982102928631 44.00651413366851 15.452871558612156 8 25.90480882753292 19.31047321247987 43.136295019991 11.648422939996207 9 83.25007540802567 3.922477050415951 8.635356181323584 4.192091360234811 10 83.48070849251833 4.287164959167692 8.492238397136804 3.7398881511771704 11 77.41748332450365 6.918747589917509 9.538257938138125 6.125511147440712 12 40.65766296006769 23.416798878572433 18.792099898312888 17.133438263046987 13 32.98637476703994 24.882933851590007 23.50676362750745 18.623927753862606 14 26.888192467875484 24.174168394694355 28.06413776258964 20.873501374840522 15 23.40493654878287 25.231875304868872 31.400321787565623 19.962866358782637 16 20.611725300634827 28.003951310559994 31.08329315071178 20.301030238093404 17 20.04271838409174 23.295761124170948 35.40020141466156 21.26131907707575 18 24.751363468083333 22.001962358273154 31.36721923894931 21.879454934694202 19 24.34003105900862 21.796348641920705 29.194593297048833 24.669027002021846 20 24.883353757069283 22.54357044229344 30.84020287033389 21.732872930303387 21 26.09723051341143 25.332197722292708 26.94589447915274 21.624677285143115 22 26.202311859600403 23.739356270903418 27.48680272070757 22.571529148788606 23 26.050481036718637 24.353468034345468 28.349358559388282 21.246692369547617 24 28.808350240360898 20.450796525702064 26.935151897307918 23.805701336629127 25 27.522809615555538 23.520970429556307 25.622457384842672 23.333762570045483 26 26.165185216807696 22.66408331484583 28.68951698972561 22.481214478620863 27 28.021272411580156 23.711957438380622 24.938781280333796 23.32798886970543 28 24.155447608743273 25.162905829897692 25.26322824732153 25.41841831403751 29 22.833795112720125 23.56792985898874 26.656194690575152 26.94208033771598 30 22.49657602073773 24.41197486445801 28.2157236406085 24.875725474195757 31 22.778052660346155 24.836709256746307 27.154832447216133 25.230405635691405 32 23.887477928718244 24.417433635688607 28.132617347835005 23.562471087758148 33 25.822157432361976 25.17242368742796 26.390639467055966 22.6147794131541 34 25.881049175830523 24.87089656118408 24.95186833443792 24.296185928547484 35 25.353472933242728 24.829605855721876 25.332687612018535 24.48423359901686 36 23.33498729436004 24.45459527060459 28.194798350891215 24.01561908414416 37 23.324874570734128 26.58442584574212 27.475045367287827 22.615654216235924 38 24.71815594309721 27.776047611682607 24.987490315929882 22.5183061292903 39 24.83891376051251 26.95954140722923 24.974648206688673 23.226896625569584 40 23.801082376357083 25.01565897516469 28.54496452848464 22.638294119993592 41 23.46081896964993 26.71501644979715 24.89304657521592 24.931118005336998 42 25.564580412949045 24.709617865018586 27.050415951369345 22.675385770663024 43 23.177942645110587 23.97754765402308 27.94306501606488 24.90144468480145 44 22.43408008857206 25.488297584213793 26.36261077631425 25.71501155089989 45 22.426906703301086 23.416413965216428 27.487642531666122 26.66903679981636 46 23.614574359311717 24.0580295375511 26.688422436109633 25.638973667027553 47 21.989855083620675 24.785970678000382 26.719320480959734 26.504853757419205 48 21.877355407297816 25.680859238585395 26.78139650764613 25.66038884647066 49 22.266187881107964 25.142645390522596 29.285082927832946 23.3060838005365 50 22.147389622595952 23.949623939651186 29.735326577987298 24.167659859765568 51 22.91973576747874 24.536791768172982 27.74007570895791 24.80339675539036 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 604.0 1 1684.0 2 2764.0 3 6313.0 4 9862.0 5 7055.0 6 4248.0 7 4223.5 8 4199.0 9 4786.0 10 5373.0 11 5291.0 12 5209.0 13 5243.5 14 5278.0 15 5076.0 16 4874.0 17 5621.5 18 6369.0 19 7201.5 20 8034.0 21 8376.0 22 8718.0 23 9827.5 24 10937.0 25 13929.5 26 24709.5 27 32497.0 28 37339.5 29 42182.0 30 47456.5 31 52731.0 32 63899.0 33 75067.0 34 84732.0 35 94397.0 36 99809.5 37 105222.0 38 118675.5 39 132129.0 40 141229.0 41 150329.0 42 157836.0 43 165343.0 44 185437.0 45 205531.0 46 229537.0 47 253543.0 48 248614.0 49 243685.0 50 222503.5 51 201322.0 52 192807.0 53 184292.0 54 177810.0 55 171328.0 56 164980.5 57 158633.0 58 144538.0 59 130443.0 60 122189.5 61 113936.0 62 97278.5 63 80621.0 64 70676.0 65 60731.0 66 50744.5 67 40758.0 68 33620.5 69 26483.0 70 22425.0 71 18367.0 72 14947.5 73 11528.0 74 9880.0 75 5638.0 76 3044.0 77 2089.0 78 1134.0 79 776.5 80 419.0 81 309.0 82 199.0 83 143.0 84 87.0 85 93.5 86 100.0 87 60.5 88 21.0 89 21.5 90 22.0 91 29.0 92 36.0 93 19.0 94 2.0 95 1.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2857786.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 16.396326948953156 #Duplication Level Percentage of deduplicated Percentage of total 1 73.79739901775852 12.100062822775232 2 10.052739307399657 3.296560008334353 3 3.8632880858392893 1.9003120366024913 4 1.998916908681148 1.3109958071410734 5 1.2840950944072886 1.0527221500724386 6 0.8450308344012656 0.8313241105673904 7 0.651101136336848 0.7472966975749717 8 0.47390457836838185 0.6216235527627025 9 0.374919550573838 0.5532573177686904 >10 3.336655245523449 12.783998328682342 >50 1.6313560988438989 19.71995284124647 >100 1.6802869532140952 42.534324422830025 >500 0.0062272598108107785 0.6871611842582929 >1k 0.003650462647716664 1.4101996676280886 >5k 4.294661938490193E-4 0.4502090517554333 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source ACTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTCTGC 7079 0.24770924064992972 RNA PCR Primer, Index 27 (95% over 23bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5708 0.19973503964257644 No Hit GGGACTGTCTAGGGCACTCAGTGCCTCAAGTGGCAGGCAGCATAGAGAACA 4128 0.1444474848711555 No Hit ATGCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTCT 3803 0.13307504480741383 RNA PCR Primer, Index 38 (95% over 21bp) ATGCCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTC 3360 0.11757353419745216 No Hit ATCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTCTG 2989 0.10459145646315016 RNA PCR Primer, Index 38 (95% over 22bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 6.998424654610248E-5 0.0 0.0 0.08741032393608199 0.0 2 1.0497636981915371E-4 0.0 0.0 0.4360018559822184 0.0 3 1.0497636981915371E-4 0.0 0.0 0.5918567730403886 0.0 4 1.0497636981915371E-4 0.0 0.0 0.8326025811589811 0.0 5 1.0497636981915371E-4 0.0 0.0 1.766017469467623 0.0 6 1.0497636981915371E-4 0.0 0.0 1.9796793741728738 0.0 7 1.0497636981915371E-4 0.0 0.0 2.3303004493688473 0.0 8 1.0497636981915371E-4 0.0 0.0 3.413411641039602 0.0 9 1.3996849309220495E-4 0.0 0.0 3.5463467173539236 0.0 10 1.3996849309220495E-4 0.0 0.0 3.8066181302588786 0.0 11 1.3996849309220495E-4 0.0 0.0 3.9943858637420715 0.0 12 1.749606163652562E-4 0.0 0.0 4.60401863540517 0.0 13 2.0995273963830743E-4 0.0 0.0 5.1088150057422075 0.0 14 2.0995273963830743E-4 0.0 0.0 5.310649572781167 0.0 15 2.4494486291135866E-4 0.0 0.0 5.4290629179371725 0.0 16 2.4494486291135866E-4 0.0 0.0 5.533199476797773 0.0 17 2.4494486291135866E-4 0.0 0.0 5.652102711679601 0.0 18 2.4494486291135866E-4 0.0 0.0 5.903836046505932 0.0 19 2.4494486291135866E-4 0.0 0.0 6.224608840549992 0.0 20 2.4494486291135866E-4 0.0 0.0 6.565852026708788 0.0 21 2.4494486291135866E-4 0.0 0.0 6.788541899218486 0.0 22 2.799369861844099E-4 0.0 0.0 7.045873973768504 0.0 23 2.799369861844099E-4 0.0 0.0 7.4250486215552876 0.0 24 3.1492910945746114E-4 0.0 0.0 7.780568594009488 0.0 25 3.499212327305124E-4 0.0 0.0 8.151310140087466 0.0 26 3.499212327305124E-4 0.0 0.0 8.45112265229097 0.0 27 3.849133560035636E-4 0.0 0.0 8.716118001837787 0.0 28 4.548976025496661E-4 0.0 0.0 8.95227984180761 0.0 29 4.898897258227173E-4 0.0 0.0 9.207757333824157 0.0 30 4.898897258227173E-4 0.0 0.0 9.457321157007557 0.0 31 5.248818490957686E-4 0.0 0.0 9.748245669899706 0.0 32 5.598739723688198E-4 0.0 0.0 10.056596260181832 0.0 33 5.94866095641871E-4 0.0 0.0 10.314488208704221 0.0 34 6.298582189149223E-4 0.0 0.0 10.57664919626592 0.0 35 6.648503421879735E-4 0.0 0.0 10.84752322252261 0.0 36 6.648503421879735E-4 0.0 0.0 11.14856045904067 0.0 37 6.648503421879735E-4 0.0 0.0 11.481440527737206 0.0 38 6.648503421879735E-4 0.0 0.0 11.760432726593244 0.0 39 6.648503421879735E-4 0.0 0.0 12.052546971676676 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTATAC 40 6.8212103E-9 45.000004 26 CGATTGA 30 2.1666383E-6 45.000004 32 ACGGATA 20 7.0350483E-4 45.000004 1 CGCCGAT 25 3.8922662E-5 45.000004 41 GTACGAC 40 6.8212103E-9 45.000004 39 TAACGCG 55 1.8189894E-12 45.0 3 AGTACGG 120 0.0 43.125004 4 ATAGCGC 155 0.0 40.645164 1 ATGCGAT 385 0.0 40.324677 1 CGTTTTT 3095 0.0 39.474957 1 CGTAAGA 75 0.0 39.000004 17 TAACGGG 300 0.0 38.250004 5 TCGCGAT 100 0.0 38.250004 2 ATCGGAT 165 0.0 38.18182 1 ACGGGTA 160 0.0 37.968754 7 CGTTACG 60 1.5643309E-10 37.500004 3 TACGACA 30 1.1403464E-4 37.500004 42 TAATGCG 60 1.5643309E-10 37.500004 10 ATCGTGT 715 0.0 37.44755 1 ATCGATT 175 0.0 37.285717 1 >>END_MODULE