SRR1545620_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545620_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2835817
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ACTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC	9868	0.3479773201162134	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6704	0.2364045352714932	No Hit
ATGCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCT	5064	0.17857287688168877	No Hit
ATGCCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTC	4295	0.15145547120988412	No Hit
ATCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTG	4241	0.14955125806778083	No Hit
GGGACTGTCTAGGGCACTCAGTGCCTCAAGTGGCAGGCAGCATAGAGAACA	4140	0.14598967422792092	No Hit
ATTGCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTC	3901	0.13756176791379698	No Hit
ATGTCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTC	3543	0.1249375400457787	No Hit
ATATCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTC	3365	0.1186606893181048	No Hit
CTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGCT	3266	0.11516963189091539	No Hit
ATGGCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTC	3055	0.10772909535417835	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATAACGG	115	0.0	45.000004	4
CGTATAG	20	7.035039E-4	45.0	37
TCGACGA	20	7.035039E-4	45.0	2
ACGTTAC	25	3.8922604E-5	44.999996	14
CGATGCA	25	3.8922604E-5	44.999996	31
TTACGAT	55	6.184564E-11	40.909092	13
CTACGAT	45	1.9299478E-8	40.0	37
CGTAAAC	40	3.4606092E-7	39.375	18
ATCCGTT	225	0.0	39.000004	1
AACGGAT	35	6.251532E-6	38.57143	6
CAATCGA	35	6.251532E-6	38.57143	44
AATCGAC	35	6.251532E-6	38.57143	45
GCTACGA	205	0.0	38.41463	10
ACGGGTA	165	0.0	38.181816	7
TCGAATC	30	1.1403441E-4	37.500004	16
ACGGTAG	30	1.1403441E-4	37.500004	27
ATCGTAC	90	0.0	37.5	1
ATCGGGT	235	0.0	37.340427	1
ATTCGTT	685	0.0	37.116787	1
TACGTAG	85	0.0	37.058823	3