SRR1545619_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545619_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2294022
Sequences flagged as poor quality	0
Sequence length	52
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGCT	7612	0.33181896250341103	No Hit
CTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGCTT	7504	0.327111073912979	Illumina Single End Adapter 1 (95% over 21bp)
TGCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC	6967	0.30370240564388656	No Hit
GTCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC	6957	0.3032664900336614	No Hit
GCCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC	6395	0.27876803273900597	No Hit
GGCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC	5170	0.2253683704864208	No Hit
ATCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC	4890	0.21316273340011563	No Hit
TTCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC	4800	0.20923949290808896	No Hit
AGCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC	3607	0.15723476060822433	No Hit
ACCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC	2950	0.12859510501642965	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGATTC	35	1.020162E-7	46.000004	23
CGAAACG	25	3.418228E-5	46.0	46
CGTACGT	30	1.8622195E-6	46.0	29
ATAACGG	60	0.0	46.0	2
CAGTCGA	20	6.312775E-4	46.0	10
CGCGTTA	30	1.8622195E-6	46.0	40
ATACGAC	20	6.312775E-4	46.0	16
CAATCGA	20	6.312775E-4	46.0	42
TAGTCGA	25	3.418228E-5	46.0	10
TACGTAG	80	0.0	43.125	1
TAAATCG	65	0.0	42.46154	1
ATACTCG	95	0.0	41.157894	44
TTGTTCG	180	0.0	40.88889	1
CGTAATC	40	2.9122748E-7	40.25	34
TAATACG	35	5.375454E-6	39.428574	10
GCGAATA	35	5.375454E-6	39.428574	9
TCAGACG	545	0.0	38.403667	22
CGAACCG	30	1.00187724E-4	38.333332	38
CGTATGA	30	1.00187724E-4	38.333332	14
ACGATTT	30	1.00187724E-4	38.333332	20