##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545619_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2294022 Sequences flagged as poor quality 0 Sequence length 52 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.522580428609665 33.0 31.0 34.0 31.0 34.0 2 32.935812298225564 34.0 31.0 34.0 31.0 34.0 3 33.013908759375454 34.0 33.0 34.0 31.0 34.0 4 36.40055980282665 37.0 37.0 37.0 35.0 37.0 5 36.376764041495676 37.0 37.0 37.0 35.0 37.0 6 36.38113104407891 37.0 37.0 37.0 35.0 37.0 7 36.46247420469376 37.0 37.0 37.0 35.0 37.0 8 36.49295516782315 37.0 37.0 37.0 35.0 37.0 9 38.284976342859835 39.0 39.0 39.0 37.0 39.0 10 38.05812585929865 39.0 39.0 39.0 35.0 39.0 11 37.884960998630355 39.0 38.0 39.0 35.0 39.0 12 37.54881862510473 39.0 37.0 39.0 35.0 39.0 13 37.483552904026205 39.0 37.0 39.0 35.0 39.0 14 38.69911971201671 41.0 38.0 41.0 35.0 41.0 15 38.7950956878356 41.0 38.0 41.0 35.0 41.0 16 38.890893810085515 41.0 38.0 41.0 35.0 41.0 17 38.834344221633444 41.0 38.0 41.0 35.0 41.0 18 38.82475495003971 40.0 38.0 41.0 35.0 41.0 19 38.801174966935804 40.0 38.0 41.0 35.0 41.0 20 38.678749375550886 40.0 38.0 41.0 35.0 41.0 21 38.66175041041455 40.0 38.0 41.0 35.0 41.0 22 38.77997072390762 40.0 38.0 41.0 35.0 41.0 23 38.77948075476172 40.0 38.0 41.0 35.0 41.0 24 38.73752649277121 40.0 38.0 41.0 35.0 41.0 25 38.66794956630756 40.0 38.0 41.0 35.0 41.0 26 38.556903551927576 40.0 37.0 41.0 35.0 41.0 27 38.488023218609065 40.0 37.0 41.0 35.0 41.0 28 38.43839597004737 40.0 37.0 41.0 35.0 41.0 29 38.38154690757107 40.0 37.0 41.0 35.0 41.0 30 38.30973896501428 40.0 37.0 41.0 34.0 41.0 31 38.233605431857235 40.0 36.0 41.0 34.0 41.0 32 38.19331941890705 40.0 36.0 41.0 34.0 41.0 33 38.09404661332803 40.0 36.0 41.0 34.0 41.0 34 38.00140190460248 40.0 36.0 41.0 34.0 41.0 35 37.92037434688944 40.0 36.0 41.0 34.0 41.0 36 37.82573270875345 40.0 35.0 41.0 34.0 41.0 37 37.761599060514676 40.0 35.0 41.0 34.0 41.0 38 37.655453609424846 40.0 35.0 41.0 33.0 41.0 39 37.53753843685893 40.0 35.0 41.0 33.0 41.0 40 37.38017464523008 40.0 35.0 41.0 33.0 41.0 41 37.23917076645298 39.0 35.0 41.0 33.0 41.0 42 37.186987744668535 39.0 35.0 41.0 33.0 41.0 43 37.10814150866906 39.0 35.0 41.0 33.0 41.0 44 36.9805686257586 39.0 35.0 41.0 33.0 41.0 45 36.944021896912936 39.0 35.0 41.0 33.0 41.0 46 36.928674616023734 39.0 35.0 41.0 33.0 41.0 47 36.88825259740317 39.0 35.0 41.0 33.0 41.0 48 36.78089704457935 38.0 35.0 41.0 32.0 41.0 49 36.71300798335849 38.0 35.0 41.0 32.0 41.0 50 36.62060825920588 38.0 35.0 41.0 32.0 41.0 51 36.49144297657128 38.0 35.0 40.0 32.0 41.0 52 36.15615543355731 37.0 35.0 40.0 31.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 1.0 9 4.0 10 6.0 11 6.0 12 21.0 13 25.0 14 34.0 15 57.0 16 95.0 17 208.0 18 450.0 19 714.0 20 1229.0 21 2079.0 22 2864.0 23 3995.0 24 5326.0 25 6918.0 26 8922.0 27 11218.0 28 14191.0 29 18264.0 30 23391.0 31 30484.0 32 40072.0 33 57380.0 34 131832.0 35 207633.0 36 141913.0 37 215183.0 38 353603.0 39 1014371.0 40 1532.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.708878990698434 13.689798964438877 45.34389818406275 12.25742386079994 2 26.6980874638517 13.063562598789375 48.034630879738735 12.203719057620198 3 26.710816199670273 13.890494511386553 43.92167991414206 15.477009374801112 4 24.086211902065454 14.623573793102246 45.41817820404512 15.872036100787176 5 24.430498051021306 16.48083584202767 43.14378850769522 15.944877599255806 6 26.007466362571936 18.93116107866446 42.83999891892928 12.221373639834317 7 85.7751146240097 2.857383233465067 6.830536062862519 4.536966079662706 8 86.45357367976419 3.107773159978413 7.071074296584776 3.367578863672624 9 78.50029337120567 5.07118065999367 9.42353647872601 7.004989490074637 10 43.456165633982586 22.049265438605207 15.072261730707028 19.422307196705173 11 34.01048464225714 22.793242610576534 24.93110353780391 18.265169209362423 12 28.291446202346794 23.444631306936028 27.093768063253098 21.170154427464077 13 24.273132515730016 22.775195704313212 34.17460686950692 18.777064910449855 14 19.67910508268883 29.65468509020402 31.3242854689275 19.341924358179654 15 19.41733775874861 22.835439241646334 36.05915723563244 21.688065763972624 16 24.72478467948433 22.08871580133059 31.57628828319868 21.610211235986405 17 24.87731155150212 21.795736919698243 27.204621402933366 26.122330125866274 18 25.137378804562466 22.462513437098686 28.793010703471893 23.607097054866955 19 26.594688281106283 24.588604642849983 27.093201372959808 21.72350570308393 20 26.642682589792077 23.19785947998755 26.01234861740646 24.147109312813914 21 26.748261350588614 24.39645304186272 28.059539097707 20.795746509841667 22 29.99513518178989 20.049894900746374 26.46099296345022 23.49397695401352 23 28.318996068913027 23.47998406292529 23.856353600793714 24.344666267367966 24 27.358543204903874 21.333317640371366 27.035573329288038 24.272565825436722 25 29.743175959079732 22.36879158090027 23.730679130365793 24.157353329654203 26 23.16268109024238 25.418544373157715 24.870947183592833 26.547827353007076 27 22.526375073996675 22.24751985813562 26.601968071797046 28.62413699607066 28 23.45683694402233 22.517395212426035 29.540649566569112 24.485118276982522 29 23.03949133879274 22.407718844893378 28.593099804622625 25.959690011691254 30 23.54293027704181 23.489051107617975 28.677449475201193 24.290569140139024 31 23.990223284693872 25.147404863597643 27.56926481088673 23.293107040821752 32 26.20149240068317 22.764995279033943 25.50332995934651 25.530182360936383 33 25.216846220306515 22.516349014961495 26.70096450687918 25.565840257852802 34 21.628083776005635 24.904338319336084 28.533771690070974 24.933806214587307 35 22.364040100748817 22.491763374544796 29.113234310743312 26.030962213963075 36 24.54789012485495 23.195156803204153 26.64826230960296 25.608690762337936 37 24.445144815524873 24.312059779723125 28.63939404242854 22.603401362323467 38 23.424056090133398 24.129847054648994 29.015109706881624 23.43098714833598 39 22.98565576092993 25.492475660651902 24.88594268058458 26.635925897833584 40 25.599623717645255 21.785274945052837 27.4236254055105 25.191475931791413 41 22.807148318542716 21.56770946398945 28.178936383347676 27.446205834120164 42 21.562434885105723 23.37301037217603 27.703701185080178 27.36085355763807 43 22.132176587670042 20.514973265295623 29.568766123428635 27.784084023605704 44 25.851364982550294 21.207120071211175 27.53395564645849 25.407559299780036 45 21.969972389105248 21.90820314713634 28.10195368658191 28.019870777176504 46 21.592731020016373 22.7995633869248 27.076592988210223 28.5311126048486 47 22.590759809626935 22.024069516334194 31.13963161643611 24.245539057602763 48 21.35934180230181 21.821237982896417 32.554744461910126 24.264675752891645 49 21.42599329910524 21.502801629626916 28.493929003296394 28.577276067971447 50 20.613446601645492 22.10881151096197 31.01448024474046 26.263261642652076 51 23.066212965699545 22.667655323270658 27.87954954224502 26.386582168784777 52 21.784272339149318 21.424859918518653 28.74619336693371 28.044674375398316 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 202.0 1 167.5 2 133.0 3 123.5 4 114.0 5 186.5 6 259.0 7 417.5 8 576.0 9 744.5 10 913.0 11 979.0 12 1045.0 13 1199.5 14 1405.0 15 1456.0 16 1548.0 17 1640.0 18 2200.0 19 2760.0 20 3052.0 21 3344.0 22 3924.0 23 4504.0 24 5124.5 25 5745.0 26 8290.0 27 10835.0 28 13314.0 29 15793.0 30 20494.0 31 25195.0 32 28242.0 33 31289.0 34 38691.5 35 46094.0 36 48515.0 37 50936.0 38 58659.0 39 77329.5 40 88277.0 41 103264.5 42 118252.0 43 134602.5 44 150953.0 45 180917.0 46 210881.0 47 224093.0 48 237305.0 49 212866.0 50 188427.0 51 170134.0 52 151841.0 53 145948.5 54 140056.0 55 135793.0 56 131530.0 57 129102.5 58 126675.0 59 120184.5 60 113694.0 61 106118.5 62 98543.0 63 89433.0 64 69761.5 65 59200.0 66 51432.0 67 43664.0 68 37216.5 69 30769.0 70 25768.0 71 20767.0 72 17780.0 73 14793.0 74 11295.5 75 7798.0 76 6082.0 77 4366.0 78 3520.5 79 2675.0 80 1973.0 81 1271.0 82 1037.5 83 804.0 84 539.0 85 274.0 86 206.0 87 138.0 88 126.5 89 69.5 90 24.0 91 19.5 92 15.0 93 12.5 94 10.0 95 9.0 96 8.0 97 6.0 98 4.0 99 2.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 2294022.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 17.51813631992958 #Duplication Level Percentage of deduplicated Percentage of total 1 69.26394943398594 12.13375308241275 2 12.231100302494319 4.285321648836548 3 4.9930648848794545 2.6240757392271536 4 2.639052069581329 1.84925095641272 5 1.611643688478345 1.4116496916958883 6 1.0391411085182976 1.0922289356799764 7 0.7750063113651501 0.9503666347910342 8 0.5382461666202203 0.754325577642604 9 0.40893334950930693 0.6447375146222502 >10 3.52300891233439 13.71330488431923 >50 1.4615288924741965 18.828706427928502 >100 1.5050946280301885 38.02163124833073 >500 0.005489403366682258 0.6350765675096721 >1k 0.003243738353039516 1.2806874768714904 >5k 0.0014971100090951613 1.774883613719474 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGCT 7612 0.33181896250341103 No Hit CTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGCTT 7504 0.327111073912979 Illumina Single End Adapter 1 (95% over 21bp) TGCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC 6967 0.30370240564388656 No Hit GTCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC 6957 0.3032664900336614 No Hit GCCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC 6395 0.27876803273900597 No Hit GGCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC 5170 0.2253683704864208 No Hit ATCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC 4890 0.21316273340011563 No Hit TTCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC 4800 0.20923949290808896 No Hit AGCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC 3607 0.15723476060822433 No Hit ACCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC 2950 0.12859510501642965 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.34075523251302736 0.0 2 0.0 0.0 0.0 0.8643334719544974 0.0 3 0.0 0.0 0.0 3.1523237353434275 0.0 4 0.0 0.0 0.0 3.662170633062804 0.0 5 0.0 0.0 0.0 4.487838390390327 0.0 6 0.0 0.0 0.0 7.01126667486188 0.0 7 0.0 0.0 0.0 7.328046548812522 0.0 8 0.0 0.0 0.0 7.927474104433174 0.0 9 0.0 0.0 0.0 8.322326464175147 0.0 10 0.0 0.0 0.0 9.664205487131335 0.0 11 0.0 0.0 0.0 10.778362195305887 0.0 12 0.0 0.0 0.0 11.231016964963718 0.0 13 0.0 0.0 0.0 11.471337240880864 0.0 14 0.0 0.0 0.0 11.612748264837913 0.0 15 4.359156102251853E-5 0.0 0.0 11.842301425182496 0.0 16 4.359156102251853E-5 0.0 0.0 12.334057825077528 0.0 17 4.359156102251853E-5 0.0 0.0 12.96879454512642 0.0 18 4.359156102251853E-5 0.0 0.0 13.64001740175116 0.0 19 4.359156102251853E-5 0.0 0.0 14.112070416064013 0.0 20 4.359156102251853E-5 0.0 0.0 14.610627099478558 0.0 21 4.359156102251853E-5 0.0 0.0 15.347455255442188 0.0 22 4.359156102251853E-5 0.0 0.0 15.987553737496851 0.0 23 8.718312204503706E-5 0.0 0.0 16.619587780762348 0.0 24 8.718312204503706E-5 0.0 0.0 17.11810087261587 0.0 25 8.718312204503706E-5 0.0 0.0 17.56399895031521 0.0 26 8.718312204503706E-5 0.0 0.0 17.964082297379885 0.0 27 8.718312204503706E-5 0.0 0.0 18.385220368418437 0.0 28 8.718312204503706E-5 0.0 0.0 18.783429278359144 0.0 29 8.718312204503706E-5 0.0 0.0 19.246153698613178 0.0 30 8.718312204503706E-5 0.0 0.0 19.690351705432644 0.0 31 8.718312204503706E-5 0.0 0.0 20.106084422904402 0.0 32 8.718312204503706E-5 0.0 0.0 20.536987003611998 0.0 33 8.718312204503706E-5 0.0 0.0 20.96387916070552 0.0 34 8.718312204503706E-5 0.0 0.0 21.428216468717387 0.0 35 8.718312204503706E-5 0.0 0.0 21.90340807542386 0.0 36 1.307746830675556E-4 0.0 0.0 22.31617656674609 0.0 37 1.307746830675556E-4 0.0 0.0 22.768874927964944 0.0 38 1.307746830675556E-4 0.0 0.0 23.275844782656836 0.0 39 1.7436624409007413E-4 0.0 0.0 24.02566322380518 0.0 40 1.7436624409007413E-4 0.0 0.0 24.489303066840684 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGATTC 35 1.020162E-7 46.000004 23 CGAAACG 25 3.418228E-5 46.0 46 CGTACGT 30 1.8622195E-6 46.0 29 ATAACGG 60 0.0 46.0 2 CAGTCGA 20 6.312775E-4 46.0 10 CGCGTTA 30 1.8622195E-6 46.0 40 ATACGAC 20 6.312775E-4 46.0 16 CAATCGA 20 6.312775E-4 46.0 42 TAGTCGA 25 3.418228E-5 46.0 10 TACGTAG 80 0.0 43.125 1 TAAATCG 65 0.0 42.46154 1 ATACTCG 95 0.0 41.157894 44 TTGTTCG 180 0.0 40.88889 1 CGTAATC 40 2.9122748E-7 40.25 34 TAATACG 35 5.375454E-6 39.428574 10 GCGAATA 35 5.375454E-6 39.428574 9 TCAGACG 545 0.0 38.403667 22 CGAACCG 30 1.00187724E-4 38.333332 38 CGTATGA 30 1.00187724E-4 38.333332 14 ACGATTT 30 1.00187724E-4 38.333332 20 >>END_MODULE