SRR1545618_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545618_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2493516
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ACTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTGC	8582	0.3441726461751198	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5770	0.23140015945355874	No Hit
ATGCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCT	3876	0.15544315737296252	No Hit
ATCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTG	3658	0.14670048237107763	No Hit
ATTGCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTC	3190	0.1279318039266642	No Hit
ATGCCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTC	3174	0.12729013970634237	No Hit
CTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTGCT	2894	0.1160610158507104	No Hit
ATGTCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTC	2846	0.11413602318974493	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	2688	0.10779958901406689	No Hit
ATATCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTC	2687	0.10775948500029676	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGACG	45	3.8562575E-10	45.000004	34
CCGATAG	45	3.8562575E-10	45.000004	13
ATTACGC	140	0.0	45.000004	1
CCCGTAA	35	1.212702E-7	45.000004	18
CGTAAGT	35	1.212702E-7	45.000004	20
CTAGCGA	45	3.8562575E-10	45.000004	16
CTATGCG	20	7.0348755E-4	45.0	20
CGTATCA	20	7.0348755E-4	45.0	40
CGAGTTA	25	3.8921236E-5	45.0	8
CACTCGA	20	7.0348755E-4	45.0	31
CGGATTA	25	3.8921236E-5	45.0	8
GTATCGC	20	7.0348755E-4	45.0	10
ACGTATC	20	7.0348755E-4	45.0	39
ACGTAAG	25	3.8921236E-5	45.0	38
CGGTCCA	40	6.8212103E-9	45.0	14
TCGACGA	20	7.0348755E-4	45.0	30
ATACCCG	20	7.0348755E-4	45.0	45
CGTATTA	30	2.1665273E-6	44.999996	30
CTAAGCG	30	2.1665273E-6	44.999996	45
CGATCAA	30	2.1665273E-6	44.999996	42