SRR1545615_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545615_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2464192
Sequences flagged as poor quality	0
Sequence length	52
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTCTGCT	6741	0.2735582292288913	No Hit
CTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTCTGCTT	6211	0.2520501649222138	Illumina Single End Adapter 2 (95% over 21bp)
TGCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTCTGC	5793	0.23508720099732489	No Hit
GTCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTCTGC	5758	0.233666857128016	No Hit
GCCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTCTGC	5036	0.20436719216684415	No Hit
GGCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTCTGC	4619	0.187444809495364	No Hit
ATCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTCTGC	4166	0.16906150170116616	No Hit
TTCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTCTGC	3982	0.1615945510739423	No Hit
AGCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTCTGC	3735	0.15157098148196244	No Hit
ACCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTCTGC	2974	0.1206886476378464	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGAAA	20	6.3128665E-4	46.000004	28
TAACGAC	20	6.3128665E-4	46.000004	8
ACCGTAT	20	6.3128665E-4	46.000004	10
ACTACGC	30	1.8622777E-6	46.0	30
GCGTAAT	30	1.8622777E-6	46.0	6
CCGTCTA	35	1.0202166E-7	45.999996	30
CGGTTAG	65	0.0	42.461536	1
ACGGGTA	45	1.5896148E-8	40.888885	5
TATCGGA	45	1.5896148E-8	40.888885	13
CGATACG	45	1.5896148E-8	40.888885	1
TTTAGCG	265	0.0	40.792454	1
CGTTACG	80	0.0	40.250004	1
TAACGGC	35	5.3756175E-6	39.42857	14
ACTAACG	35	5.3756175E-6	39.42857	19
ACGACCA	635	0.0	39.118107	28
TAGTACG	95	0.0	38.736843	1
TTTGGGC	5125	0.0	38.550243	4
ACACGAC	635	0.0	38.3937	26
CAACCGT	30	1.0018991E-4	38.333332	35
CGTCCTA	30	1.0018991E-4	38.333332	33