SRR1545614_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545614_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1384658
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ACTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCTGC	7885	0.5694546956721444	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3724	0.2689472779560007	No Hit
ATCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCTG	3507	0.2532755380751059	No Hit
ATGCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCT	3147	0.22727633827269983	No Hit
CTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCTGCT	2867	0.20705473842638397	Illumina Single End Adapter 1 (95% over 21bp)
ATTGCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTC	2481	0.17917781863824858	No Hit
ATGCCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTC	2439	0.1761445786613012	No Hit
ATGTCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTC	2254	0.16278387876284253	No Hit
ATATCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTC	2119	0.15303417883694026	No Hit
CCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCTGC	2038	0.14718435888139886	No Hit
ATTGGTGGGTTGGTGAGACAATCAGATCGATAAATTGATTAAATGCTCCTA	1935	0.13974569893793268	No Hit
ATGGCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTC	1895	0.13685689895988756	No Hit
ATAGCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTC	1831	0.13223481899501538	No Hit
ATTTCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTC	1760	0.1271071990339853	No Hit
ATGTTTCGGGGTAACAAAACTATTTGCCAGAGAACTACTAGCCATAGCTTA	1391	0.10045801923651905	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCGGCA	40	6.8175723E-9	45.000004	15
TCGCCAC	20	7.0337864E-4	45.000004	18
AACCGTA	35	1.2121745E-7	45.000004	20
CGGCGAA	40	6.8175723E-9	45.000004	39
CCTTAGT	20	7.0337864E-4	45.000004	21
CTGTCGT	20	7.0337864E-4	45.000004	39
TCGTTCG	35	1.2121745E-7	45.000004	3
CTCACCG	40	6.8175723E-9	45.000004	21
GTCGCAT	20	7.0337864E-4	45.000004	44
ACCGGTG	35	1.2121745E-7	45.000004	22
TCGCACA	75	0.0	45.000004	26
AAATCCG	20	7.0337864E-4	45.000004	21
GTCGACT	20	7.0337864E-4	45.000004	37
CTCCGAC	35	1.2121745E-7	45.000004	21
GGTCGAC	20	7.0337864E-4	45.000004	11
ACGCATA	30	2.1658252E-6	45.000004	26
CCCTATT	40	6.8175723E-9	45.000004	31
TCCGACA	20	7.0337864E-4	45.000004	20
CGGCCAG	40	6.8175723E-9	45.000004	24
TAGCGCA	40	6.8175723E-9	45.000004	3