##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545613_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1145506 Sequences flagged as poor quality 0 Sequence length 52 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.56975781881544 33.0 31.0 34.0 31.0 34.0 2 32.95746159339192 34.0 31.0 34.0 31.0 34.0 3 33.02517140896687 34.0 33.0 34.0 31.0 34.0 4 36.40062557507338 37.0 37.0 37.0 35.0 37.0 5 36.37218312256767 37.0 37.0 37.0 35.0 37.0 6 36.37725162504605 37.0 37.0 37.0 35.0 37.0 7 36.47922839339122 37.0 37.0 37.0 35.0 37.0 8 36.53281082770409 37.0 37.0 37.0 35.0 37.0 9 38.35937131712972 39.0 39.0 39.0 37.0 39.0 10 38.10571834630286 39.0 39.0 39.0 35.0 39.0 11 37.90326545648823 39.0 38.0 39.0 35.0 39.0 12 37.31328338742879 39.0 35.0 39.0 35.0 39.0 13 37.1692823957273 39.0 35.0 39.0 35.0 39.0 14 38.4470888847374 40.0 36.0 41.0 35.0 41.0 15 38.53071830265402 40.0 36.0 41.0 35.0 41.0 16 38.62359428933589 40.0 36.0 41.0 35.0 41.0 17 38.56352040059153 40.0 36.0 41.0 35.0 41.0 18 38.58490920169776 40.0 36.0 41.0 35.0 41.0 19 38.572796650563156 40.0 36.0 41.0 35.0 41.0 20 38.431392764420266 40.0 36.0 41.0 35.0 41.0 21 38.3982816327457 40.0 35.0 41.0 35.0 41.0 22 38.484816316981316 40.0 35.0 41.0 35.0 41.0 23 38.508526363022106 40.0 35.0 41.0 35.0 41.0 24 38.473796732622965 40.0 35.0 41.0 35.0 41.0 25 38.427041848755046 40.0 35.0 41.0 35.0 41.0 26 38.29345372263436 40.0 35.0 41.0 35.0 41.0 27 38.181860243420815 40.0 35.0 41.0 35.0 41.0 28 38.16599476563196 40.0 35.0 41.0 35.0 41.0 29 38.11047519611421 40.0 36.0 41.0 35.0 41.0 30 38.09952719584184 40.0 36.0 41.0 35.0 41.0 31 38.03809320946377 40.0 35.0 41.0 34.0 41.0 32 37.922421183302404 40.0 35.0 41.0 34.0 41.0 33 37.861022115990664 40.0 35.0 41.0 34.0 41.0 34 37.754519836648605 40.0 35.0 41.0 34.0 41.0 35 37.69328227001866 40.0 35.0 41.0 34.0 41.0 36 37.59890389050778 40.0 35.0 41.0 34.0 41.0 37 37.514146586748566 40.0 35.0 41.0 33.0 41.0 38 37.44840707949151 40.0 35.0 41.0 33.0 41.0 39 37.42561016703535 39.0 35.0 41.0 33.0 41.0 40 37.28907137980945 39.0 35.0 41.0 33.0 41.0 41 37.195329400282496 39.0 35.0 41.0 33.0 41.0 42 37.13394691952727 39.0 35.0 41.0 33.0 41.0 43 37.04165757315981 39.0 35.0 41.0 33.0 41.0 44 36.92406849025671 39.0 35.0 41.0 33.0 41.0 45 36.813430920484045 38.0 35.0 41.0 32.0 41.0 46 36.81353480470639 38.0 35.0 41.0 33.0 41.0 47 36.777723556227556 38.0 35.0 41.0 33.0 41.0 48 36.691880269505354 38.0 35.0 40.0 33.0 41.0 49 36.62748078141887 38.0 35.0 40.0 33.0 41.0 50 36.446842705319746 37.0 35.0 40.0 32.0 41.0 51 36.236327876065246 37.0 35.0 40.0 32.0 41.0 52 35.86403039355534 36.0 35.0 40.0 31.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 1.0 12 5.0 13 7.0 14 10.0 15 14.0 16 27.0 17 62.0 18 112.0 19 256.0 20 410.0 21 721.0 22 1142.0 23 1782.0 24 2537.0 25 3515.0 26 4492.0 27 5689.0 28 7213.0 29 9233.0 30 11604.0 31 14771.0 32 19097.0 33 27060.0 34 67231.0 35 176867.0 36 63124.0 37 84714.0 38 152697.0 39 490559.0 40 553.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.184313307830777 13.408572281594337 46.118745776975416 12.288368633599475 2 24.733261982041125 12.911150181666443 50.319684052287805 12.035903784004622 3 24.838019181043137 13.859290130300497 45.11115611790772 16.191534570748647 4 22.10446737075144 13.77190516679965 49.232828112641926 14.890799349806985 5 22.462213205343314 16.598167098208126 45.048738286835686 15.89088140961287 6 22.38547855707434 19.06450075337886 45.69814562298233 12.85187506656447 7 84.92151066864774 2.688593512386666 6.893460182661635 5.496435636303956 8 87.44703214125461 2.1252616747533404 7.014105556845621 3.4136006271464314 9 80.06409394625607 3.5540625714749643 8.97612059648749 7.405722885781479 10 46.563876575068136 19.091650327453543 14.720481603762877 19.62399149371544 11 38.437773350816144 20.26650231426112 24.312923721045546 16.982800613877185 12 32.032394417838056 23.98372422318172 24.712921625901565 19.27095973307866 13 19.662227871351178 32.50921426862888 30.86417705363394 16.964380806385996 14 14.401932421130923 40.08621517477866 29.233107465172598 16.278744938917825 15 14.156102194139534 24.43007718859613 42.647092202048704 18.766728415215635 16 18.70885006276702 21.82223401710685 39.27356120352054 20.19535471660559 17 18.234387248953738 22.06317557481148 27.599942732731215 32.10249444350357 18 22.042660623340254 22.754660385890602 31.52196496570075 23.680714025068397 19 25.983102663800977 24.506811836865104 28.657292061324863 20.852793438009055 20 27.92984061192172 21.109099384900645 25.766342559532646 25.194717443644993 21 22.803023292763196 27.155946804294345 29.47518389253308 20.565846010409373 22 25.889781459023347 21.473392544430148 25.37001115664169 27.266814839904814 23 22.92777165724143 27.440799087913987 21.90150029768504 27.729928957159544 24 22.90987563574525 21.012024380492115 31.729820708053907 24.348279275708727 25 26.984406890928554 21.183826186855413 28.342845868987155 23.48892105322888 26 20.941662461829097 29.290811222289538 25.225882710348092 24.541643605533274 27 22.476268129542753 28.414953740966876 23.87818134518719 25.230596784303184 28 22.17709902872617 25.650149366306245 31.47639558413487 20.696356020832717 29 18.973100097249603 26.61889156407736 29.170689634100565 25.237318704572477 30 23.34976857388787 27.348088966797206 29.86784879345896 19.43429366585596 31 27.568428275364777 27.413387620841796 22.390629119358607 22.627554984434823 32 27.11072661339181 27.52154942881137 22.731002718449314 22.6367212393475 33 28.281999395900154 24.573681848894722 24.85844683484853 22.28587192035659 34 21.20215869668077 26.783098473513018 27.28418707540598 24.73055575440024 35 22.85129890196996 24.157010089864215 28.649347973733878 24.342343034431945 36 30.138296962215826 24.158843340846754 24.078616785944376 21.624242910993047 37 23.54173614105906 26.34137228438786 29.742052856990707 20.37483871756237 38 20.96872473823795 26.708808159887422 29.690547234148053 22.631919867726577 39 21.17745345724946 28.53909102178426 25.46280857542431 24.82064694554197 40 26.620113731399048 22.407652164196435 26.621335898720737 24.350898205683777 41 22.688139564524324 22.375788516166654 27.48776523213322 27.4483066871758 42 23.43793921638123 24.29101200692096 25.34155211757948 26.92949665911833 43 22.082904847290195 22.72655053749173 28.053977892739102 27.13656672247897 44 25.950889825107858 25.566605500102142 25.2194226830763 23.263081991713705 45 19.841013490981275 28.184313307830777 25.112483042428412 26.862190158759535 46 22.372122014201583 25.945128179162747 25.41173944091083 26.27101036572484 47 23.376132468970045 24.641686730580197 29.461128968333643 22.52105183211611 48 23.460636609498337 20.43498680932269 33.669662140573685 22.434714440605287 49 21.36863534542813 21.162787449389178 28.03774052689379 29.430836678288898 50 19.98007867265645 24.764689141741727 31.048375128545814 24.20685705705601 51 23.558933781228557 24.955783732254567 26.147571466234137 25.33771102028274 52 21.49303451924302 21.496701021208096 30.325637753097755 26.684626706451127 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 546.0 1 420.0 2 294.0 3 240.5 4 187.0 5 208.0 6 229.0 7 278.5 8 328.0 9 487.0 10 646.0 11 709.5 12 773.0 13 728.5 14 756.0 15 828.0 16 870.5 17 913.0 18 891.0 19 869.0 20 1279.5 21 1690.0 22 2393.0 23 3096.0 24 3030.5 25 2965.0 26 4144.5 27 5324.0 28 6009.5 29 6695.0 30 8197.0 31 9699.0 32 10933.5 33 12168.0 34 17337.5 35 22507.0 36 25071.5 37 27636.0 38 30992.5 39 44957.0 40 55565.0 41 71109.5 42 86654.0 43 91433.5 44 96213.0 45 100824.0 46 105435.0 47 117341.5 48 129248.0 49 130261.5 50 131275.0 51 112322.0 52 93369.0 53 79648.5 54 65928.0 55 60215.5 56 54503.0 57 50430.5 58 46358.0 59 42738.0 60 39118.0 61 37280.5 62 35443.0 63 30191.0 64 22176.0 65 19413.0 66 14509.0 67 9605.0 68 8729.0 69 7853.0 70 6275.5 71 4698.0 72 4054.0 73 3410.0 74 2691.5 75 1973.0 76 1584.5 77 1196.0 78 809.5 79 423.0 80 377.0 81 331.0 82 206.5 83 82.0 84 49.5 85 17.0 86 19.0 87 21.0 88 14.0 89 4.5 90 2.0 91 1.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 1145506.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 14.793918944262243 #Duplication Level Percentage of deduplicated Percentage of total 1 65.77999740916755 9.731439498250051 2 12.263145383399205 3.628399576074232 3 5.864111961003664 2.6025959109350074 4 3.3787987905118326 1.999427017432134 5 2.220364125769941 1.6423943451694103 6 1.5602696300252457 1.384950146267251 7 1.1435571107685174 1.1842383843390916 8 0.8539562214252626 1.0106687297371035 9 0.6232034247595222 0.8297658856511104 >10 3.9508868463316227 11.3755607930491 >50 0.6358901743235337 6.825582593494943 >100 1.700430549723094 52.06888034188658 >500 0.014760681855235193 1.4344178922024207 >1k 0.010037263661559931 3.769386781153529 >5k 5.904272742094077E-4 0.5122921043580073 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCTGCTT 5865 0.512000810122339 Illumina Single End Adapter 1 (95% over 22bp) GCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCTGCT 4969 0.4337821015341692 Illumina Single End Adapter 1 (95% over 21bp) GTCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCTGC 4498 0.3926649009258791 No Hit TTCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCTGC 4494 0.392315710262539 No Hit TGCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCTGC 4388 0.38306215768402785 No Hit GCCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCTGC 3674 0.32073162427783003 No Hit GGCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCTGC 3295 0.28764580892636094 No Hit ATCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCTGC 3044 0.2657340948017732 No Hit AGCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCTGC 2551 0.2226963455451128 No Hit ACCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCTGC 1790 0.15626282184466952 No Hit CCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCTGCT 1576 0.1375811213559772 Illumina Single End Adapter 1 (95% over 21bp) CTCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCTGC 1498 0.13077190342084632 No Hit TGGTGGGTTGGTGAGACAATCAGATCGATAAATTGATTAAATGCTCCTAACC 1437 0.12544674580491066 No Hit TCCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCTGC 1422 0.1241372808173855 No Hit TTGCTTGGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAAGAGCTAG 1243 0.10851099863291855 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.5343490125761018 0.0 2 0.0 0.0 0.0 1.2686096799143785 0.0 3 0.0 0.0 0.0 4.40015154874789 0.0 4 0.0 0.0 0.0 5.054796744844636 0.0 5 0.0 0.0 0.0 6.078187281428469 0.0 6 0.0 0.0 0.0 9.400649145443149 0.0 7 0.0 0.0 0.0 9.831637721670598 0.0 8 0.0 0.0 0.0 10.685059702873664 0.0 9 0.0 0.0 0.0 11.20936948387874 0.0 10 0.0 0.0 0.0 12.950084940628857 0.0 11 0.0 0.0 0.0 14.394861310198287 0.0 12 0.0 0.0 0.0 15.009611473008436 0.0 13 0.0 0.0 0.0 15.296384305276446 0.0 14 0.0 0.0 0.0 15.439552477245863 0.0 15 0.0 0.0 0.0 15.666351813085221 0.0 16 0.0 0.0 0.0 16.29262526778559 0.0 17 0.0 0.0 0.0 17.183497947631878 0.0 18 0.0 0.0 0.0 18.21841177610593 0.0 19 8.729766583501091E-5 0.0 0.0 18.755379718657082 0.0 20 8.729766583501091E-5 0.0 0.0 19.536082744219584 0.0 21 8.729766583501091E-5 0.0 0.0 20.42206675477911 0.0 22 8.729766583501091E-5 0.0 0.0 21.11983699779835 0.0 23 8.729766583501091E-5 0.0 0.0 21.907349241295986 0.0 24 8.729766583501091E-5 0.0 0.0 22.440214193552894 0.0 25 8.729766583501091E-5 0.0 0.0 22.905947240782677 0.0 26 8.729766583501091E-5 0.0 0.0 23.358760233468878 0.0 27 8.729766583501091E-5 0.0 0.0 23.77499550417021 0.0 28 8.729766583501091E-5 0.0 0.0 24.260981609873713 0.0 29 8.729766583501091E-5 0.0 0.0 24.690573423447805 0.0 30 8.729766583501091E-5 0.0 0.0 25.15770323333095 0.0 31 8.729766583501091E-5 0.0 0.0 25.620380862256503 0.0 32 8.729766583501091E-5 0.0 0.0 26.06123407472331 0.0 33 8.729766583501091E-5 0.0 0.0 26.504182431170154 0.0 34 1.7459533167002181E-4 0.0 0.0 26.958130293512212 0.0 35 1.7459533167002181E-4 0.0 0.0 27.491606329429963 0.0 36 1.7459533167002181E-4 0.0 0.0 27.93438009054514 0.0 37 1.7459533167002181E-4 0.0 0.0 28.406573165046712 0.0 38 1.7459533167002181E-4 0.0 0.0 28.835030108964947 0.0 39 1.7459533167002181E-4 0.0 0.0 29.266891661850746 0.0 40 1.7459533167002181E-4 0.0 0.0 29.70652270699586 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCTTCGA 55 1.8189894E-12 46.000004 46 CAGCGTT 35 1.01956175E-7 46.000004 32 GTACCCA 35 1.01956175E-7 46.000004 31 CGAACGC 35 1.01956175E-7 46.000004 31 TCACCCG 35 1.01956175E-7 46.000004 42 GGTCGTA 55 1.8189894E-12 46.000004 40 CTACTAT 35 1.01956175E-7 46.000004 25 GATCGCA 35 1.01956175E-7 46.000004 38 TTAGCTA 75 0.0 46.000004 33 TTAGCGT 35 1.01956175E-7 46.000004 26 TTAGCAA 35 1.01956175E-7 46.000004 42 TAGACGG 75 0.0 46.000004 2 TCCGAAC 35 1.01956175E-7 46.000004 29 CGTGAAA 35 1.01956175E-7 46.000004 26 GCAAATC 35 1.01956175E-7 46.000004 26 TAAACCG 35 1.01956175E-7 46.000004 25 CGCGATA 35 1.01956175E-7 46.000004 32 CATTAGG 35 1.01956175E-7 46.000004 16 AGTATAC 35 1.01956175E-7 46.000004 28 CATTAAG 35 1.01956175E-7 46.000004 35 >>END_MODULE