FastQCFastQC Report
Thu 26 May 2016
SRR1545612_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1545612_1.fastq.gz
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences1389465
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTCTGC44410.31961942186381087No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT33070.2380052754117592No Hit
ATCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTCTG26200.18856178457175962No Hit
CTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTCTGCT20220.14552363679545724Illumina Single End Adapter 2 (95% over 21bp)
ATGCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTCT19080.1373190400621822No Hit
CCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTCTGC16690.12011817498101787No Hit
ATGCCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTC15780.11356889162375447No Hit
ATTGCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTC14920.10737945900040663No Hit
ATGTCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTC14560.10478853371621451No Hit

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGACTTA207.033795E-445.00000411
ATCTCGA351.2121745E-745.0000041
ACACGTT406.8175723E-945.00000419
ACACGTA207.033795E-445.00000439
ACACGGT207.033795E-445.00000432
CGAACGA207.033795E-445.00000425
CGAAATA351.2121745E-745.00000445
CGACGAA406.8175723E-945.00000423
CCGATCA207.033795E-445.00000432
ACGTTAG800.045.0000043
CGCATTA351.2121745E-745.0000043
CCGGATG207.033795E-445.00000425
TCGATTA207.033795E-445.00000438
CACGAAC351.2121745E-745.00000445
ATCCGTT800.045.0000041
ACGATTT406.8175723E-945.00000414
GCCGATT207.033795E-445.00000418
TACGCTA351.2121745E-745.0000042
CCCGTAG207.033795E-445.00000417
TACGACA351.2121745E-745.0000042