SRR1545612_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545612_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1389465
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ACTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTCTGC	4441	0.31961942186381087	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3307	0.2380052754117592	No Hit
ATCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTCTG	2620	0.18856178457175962	No Hit
CTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTCTGCT	2022	0.14552363679545724	Illumina Single End Adapter 2 (95% over 21bp)
ATGCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTCT	1908	0.1373190400621822	No Hit
CCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTCTGC	1669	0.12011817498101787	No Hit
ATGCCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTC	1578	0.11356889162375447	No Hit
ATTGCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTC	1492	0.10737945900040663	No Hit
ATGTCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTC	1456	0.10478853371621451	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGACTTA	20	7.033795E-4	45.000004	11
ATCTCGA	35	1.2121745E-7	45.000004	1
ACACGTT	40	6.8175723E-9	45.000004	19
ACACGTA	20	7.033795E-4	45.000004	39
ACACGGT	20	7.033795E-4	45.000004	32
CGAACGA	20	7.033795E-4	45.000004	25
CGAAATA	35	1.2121745E-7	45.000004	45
CGACGAA	40	6.8175723E-9	45.000004	23
CCGATCA	20	7.033795E-4	45.000004	32
ACGTTAG	80	0.0	45.000004	3
CGCATTA	35	1.2121745E-7	45.000004	3
CCGGATG	20	7.033795E-4	45.000004	25
TCGATTA	20	7.033795E-4	45.000004	38
CACGAAC	35	1.2121745E-7	45.000004	45
ATCCGTT	80	0.0	45.000004	1
ACGATTT	40	6.8175723E-9	45.000004	14
GCCGATT	20	7.033795E-4	45.000004	18
TACGCTA	35	1.2121745E-7	45.000004	2
CCCGTAG	20	7.033795E-4	45.000004	17
TACGACA	35	1.2121745E-7	45.000004	2