SRR1545608_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545608_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3456687
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ACTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGC	14006	0.4051856589850339	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8724	0.25238038619059233	No Hit
ATCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTG	6814	0.19712516638040992	No Hit
ATGCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCT	6305	0.18240008424251314	No Hit
CTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGCT	5093	0.14733760968233456	Illumina Single End Adapter 1 (95% over 21bp)
ATATCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTC	4662	0.13486902343197404	No Hit
CCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGC	3803	0.11001863923461974	No Hit
ATGTCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTC	3792	0.10970041545560821	No Hit
ATTGCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTC	3716	0.10750177843698316	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACACGTA	25	3.892437E-5	45.0	17
CGAACCG	25	3.892437E-5	45.0	17
ACACGAT	20	7.035255E-4	45.0	28
CGACGAA	45	3.8562575E-10	45.0	19
GACGTAT	20	7.035255E-4	45.0	26
GGCGTAA	20	7.035255E-4	45.0	9
CCGTAGT	20	7.035255E-4	45.0	17
CCGTAAG	25	3.892437E-5	45.0	30
CGTAACG	50	2.1827873E-11	45.0	3
CGTCGCA	25	3.892437E-5	45.0	22
AATAGCG	20	7.035255E-4	45.0	32
CGATTAC	30	2.166773E-6	44.999996	37
TCAATCG	60	0.0	44.999996	36
ATTTCGC	210	0.0	42.857143	1
ATTCGAT	280	0.0	42.589283	1
ATCGCTA	185	0.0	42.567566	1
TCCTACG	80	0.0	42.1875	44
TTACACG	295	0.0	41.949154	36
ATAGCGC	70	0.0	41.785713	1
TCGAGTA	65	0.0	41.538464	2