SRR1545607_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545607_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2904594
Sequences flagged as poor quality	0
Sequence length	52
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGCTT	12287	0.4230195338832209	Illumina Single End Adapter 1 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGCT	10006	0.344488765039107	Illumina Single End Adapter 1 (95% over 21bp)
TTCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGC	8269	0.2846869476422522	No Hit
GTCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGC	7437	0.25604266895820893	No Hit
ATCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGC	7170	0.24685033433244027	No Hit
TGCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGC	6754	0.23252819499041863	No Hit
GCCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGC	4931	0.16976555071035745	No Hit
AGCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGC	4236	0.14583793810770113	No Hit
GGCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGC	3735	0.12858940010204525	No Hit
TCCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGC	3630	0.12497443704696767	No Hit
ACCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGC	3614	0.124423585533813	No Hit
CTCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGC	3456	0.11898392684141054	No Hit
CCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGCT	3208	0.11044572838751303	Illumina Single End Adapter 1 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACGAA	40	5.6170393E-9	46.000004	17
GGCGTAA	20	6.3130533E-4	46.000004	7
TACGCCG	20	6.3130533E-4	46.000004	16
TCGCTAA	20	6.3130533E-4	46.000004	26
ACGCTTA	20	6.3130533E-4	46.000004	26
CCGCGTA	35	1.02028935E-7	46.000004	39
CGGTACC	20	6.3130533E-4	46.000004	34
TTCGATC	20	6.3130533E-4	46.000004	28
GTGCGTT	20	6.3130533E-4	46.000004	37
ATACCGG	40	5.6170393E-9	46.000004	2
TACGTCG	20	6.3130533E-4	46.000004	39
GACGTAT	25	3.4184537E-5	46.0	24
CCCGTAT	45	3.110472E-10	46.0	19
TTCGATA	25	3.4184537E-5	46.0	15
TACCGGT	25	3.4184537E-5	46.0	40
TAGCGAT	30	1.8623923E-6	45.999996	19
CCGTCGA	30	1.8623923E-6	45.999996	35
TTATACG	60	0.0	45.999996	1
TCAATCG	30	1.8623923E-6	45.999996	34
GTTCGAC	30	1.8623923E-6	45.999996	46