##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545605_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3163817 Sequences flagged as poor quality 0 Sequence length 52 %GC 52 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.52066096111121 33.0 31.0 34.0 31.0 34.0 2 32.93867186376456 34.0 31.0 34.0 31.0 34.0 3 33.01574458952588 34.0 33.0 34.0 31.0 34.0 4 36.410320508423844 37.0 37.0 37.0 35.0 37.0 5 36.37766248806426 37.0 37.0 37.0 35.0 37.0 6 36.385977444333854 37.0 37.0 37.0 35.0 37.0 7 36.461883541304694 37.0 37.0 37.0 35.0 37.0 8 36.50255435127885 37.0 37.0 37.0 35.0 37.0 9 38.32143420431713 39.0 39.0 39.0 37.0 39.0 10 38.074635795938896 39.0 39.0 39.0 35.0 39.0 11 37.861476185253444 39.0 38.0 39.0 35.0 39.0 12 37.34481261084317 39.0 37.0 39.0 35.0 39.0 13 37.208326840648496 39.0 36.0 39.0 35.0 39.0 14 38.09270131616336 40.0 37.0 41.0 33.0 41.0 15 38.29866582043146 40.0 36.0 41.0 33.0 41.0 16 38.45436856809354 40.0 36.0 41.0 34.0 41.0 17 38.42471641058886 40.0 36.0 41.0 34.0 41.0 18 38.40602506402867 40.0 36.0 41.0 34.0 41.0 19 38.35714170573077 40.0 36.0 41.0 34.0 41.0 20 38.22373734005475 40.0 36.0 41.0 33.0 41.0 21 38.224652374015314 40.0 36.0 41.0 34.0 41.0 22 38.40445828567202 40.0 36.0 41.0 34.0 41.0 23 38.43950108365939 40.0 36.0 41.0 35.0 41.0 24 38.3970134808682 40.0 36.0 41.0 35.0 41.0 25 38.31553120803131 40.0 35.0 41.0 35.0 41.0 26 38.184386454715934 40.0 35.0 41.0 34.0 41.0 27 38.079916126628056 40.0 35.0 41.0 34.0 41.0 28 37.96550717061069 40.0 35.0 41.0 34.0 41.0 29 37.89291826929307 40.0 35.0 41.0 34.0 41.0 30 37.797361225380605 40.0 35.0 41.0 34.0 41.0 31 37.647578225921414 40.0 35.0 41.0 34.0 41.0 32 37.63965204055734 40.0 35.0 41.0 34.0 41.0 33 37.57700935294298 40.0 35.0 41.0 33.0 41.0 34 37.34335993516692 40.0 35.0 41.0 33.0 41.0 35 37.27653242902481 39.0 35.0 41.0 33.0 41.0 36 37.208168171547214 39.0 35.0 41.0 33.0 41.0 37 37.11683798399212 39.0 35.0 41.0 33.0 41.0 38 37.05369495138309 39.0 35.0 41.0 33.0 41.0 39 36.90077080943683 39.0 35.0 41.0 32.0 41.0 40 36.771135625100946 39.0 35.0 41.0 32.0 41.0 41 36.58404958314593 38.0 35.0 41.0 32.0 41.0 42 36.517974016828404 38.0 35.0 41.0 32.0 41.0 43 36.448219350234226 38.0 35.0 40.0 32.0 41.0 44 36.32185963979585 38.0 35.0 40.0 31.0 41.0 45 36.25264577565643 37.0 35.0 40.0 31.0 41.0 46 36.22182920187862 37.0 35.0 40.0 31.0 41.0 47 36.16425286291843 37.0 35.0 40.0 31.0 41.0 48 36.031638682009735 37.0 35.0 40.0 31.0 41.0 49 35.91761091112413 37.0 35.0 40.0 31.0 41.0 50 35.803909328510464 36.0 35.0 40.0 31.0 41.0 51 35.677440888648114 36.0 35.0 40.0 31.0 41.0 52 35.315124420913094 36.0 34.0 40.0 30.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 3.0 10 7.0 11 21.0 12 28.0 13 55.0 14 92.0 15 113.0 16 214.0 17 405.0 18 702.0 19 1332.0 20 2319.0 21 3537.0 22 5157.0 23 7046.0 24 9870.0 25 12730.0 26 16044.0 27 19867.0 28 24695.0 29 30776.0 30 38430.0 31 49505.0 32 65277.0 33 95527.0 34 257965.0 35 334071.0 36 208216.0 37 308706.0 38 508620.0 39 1161129.0 40 1357.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.357555762548845 13.59117799796891 46.71110876514034 12.340157474341911 2 26.001440664867786 12.30428308590541 49.61930478279875 12.074971466428051 3 25.974953671467095 13.490761317737404 46.07617950090034 14.458105509895166 4 24.79574513949448 13.873463604247654 46.78358451199927 14.547206744258597 5 23.87476898948327 16.255459781649822 44.61026032795196 15.259510900914938 6 26.96255820105904 19.326907972237333 42.3268792095118 11.383654617191828 7 87.20434841838197 2.743047401287748 6.294769893454647 3.7578342868756316 8 88.5130524300236 2.4446736331462913 6.17987702828577 2.8623969085443313 9 81.6674921463536 4.254196750317734 8.230438106881657 5.847872996447013 10 50.50965337122849 18.636191663424277 13.293815666329625 17.56033929901761 11 40.06859435928184 19.52812062138866 21.809289222480313 18.593995796849185 12 33.42007454919169 19.706828808366602 26.010670022950126 20.862426619491583 13 29.542163785073537 18.505779569425158 32.235018649940876 19.71703799556043 14 21.750499475791425 24.30630469461413 34.265856716744366 19.677339112850078 15 22.26999854922077 18.900397842226653 37.523756905029586 21.30584670352299 16 30.43798045209315 18.812782155225793 29.667961200031478 21.081276192649575 17 29.976133259287753 19.760592979935314 26.67436201272071 23.588911748056223 18 30.770300557838837 18.887502026823928 28.57554656290171 21.766650852435525 19 29.034801949670285 23.565016560692353 26.052676245181054 21.3475052444563 20 28.03291087948513 24.192802554635744 25.206009070688978 22.568277495190145 21 28.37016173817892 23.462102896596104 28.04735545703181 20.120379908193172 22 29.791071986780526 18.805291203631562 28.66701835156711 22.736618458020804 23 29.70383558846798 20.31817895914966 25.80455822824139 24.173427224140966 24 30.644724394615746 20.61904971115586 25.453273688079936 23.28295220614846 25 33.99131492118539 19.079516925283606 21.626756541228524 25.302411612302482 26 25.52846767053847 21.293361784199274 24.610336185689626 28.56783435957263 27 25.21978989303111 18.818123804252902 27.87417856342513 28.087907739290863 28 24.671559701461874 21.25688685533961 26.635990640419465 27.435562802779046 29 26.973557573020184 22.720751547892938 23.913488043082136 26.392202836004735 30 31.528814719688274 21.165573103627676 25.608718835507872 21.696893341176178 31 28.854766252283238 20.300257568626755 28.127985910689524 22.71699026840048 32 33.13813662421057 19.29782917279982 23.130667797789823 24.433366405199795 33 34.275054467436014 20.047019154394835 23.312220649930133 22.36570572823902 34 25.78192733650524 21.575931856994256 29.366047404132413 23.27609340236809 35 25.795961017972914 24.301911267307812 28.489384815872725 21.412742898846552 36 29.403596984275637 25.243653473004287 22.606554045319307 22.746195497400766 37 28.01871916106399 26.8712760567378 23.020041930364492 22.089962851833718 38 27.766176109427317 22.6491924153641 26.36388261394385 23.22074886126473 39 25.764954167703124 23.58584583115901 24.13673104354645 26.512468957591416 40 29.918386556491733 19.54098482940069 26.222060251904583 24.318568362202996 41 25.074933221485313 21.58456067465343 25.465790214794342 27.87471588906691 42 22.510752044128974 22.568530354315687 26.67480451619041 28.245913085364926 43 22.548428053834975 19.55204741614322 28.315765418796346 29.58375911122546 44 27.66519049616334 19.29647005500002 25.593231214068325 27.445108234768316 45 23.951322089741602 19.88974077830671 26.37598824457925 29.782948887372434 46 23.59965826089183 20.93790506846635 26.553590172882945 28.908846497758876 47 24.064255296687513 21.124767962243077 29.86105074977472 24.94992599129469 48 24.05328753211706 22.068533040943898 29.744672337243273 24.13350708969577 49 25.52454835409254 19.470152666857786 27.709093161835845 27.296205817213824 50 22.508033808529383 21.005323632814413 28.91507315372539 27.57156940493082 51 24.495727787036987 21.81671695929316 27.40202736125383 26.285527892416027 52 23.206746787187754 21.170914752654785 27.630043077712774 27.992295382444688 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 161.0 1 136.0 2 111.0 3 112.0 4 113.0 5 185.0 6 257.0 7 472.0 8 687.0 9 813.5 10 940.0 11 1193.0 12 1446.0 13 1431.0 14 1352.0 15 1288.0 16 1713.0 17 2138.0 18 2139.5 19 2141.0 20 2225.5 21 2310.0 22 3030.0 23 3750.0 24 5283.0 25 6816.0 26 7961.0 27 9106.0 28 11645.0 29 14184.0 30 17215.5 31 20247.0 32 25346.5 33 30446.0 34 36374.5 35 42303.0 36 47193.0 37 52083.0 38 57137.0 39 68979.0 40 75767.0 41 85402.0 42 95037.0 43 108346.0 44 121655.0 45 149707.0 46 177759.0 47 216568.5 48 255378.0 49 277023.0 50 298668.0 51 285971.0 52 273274.0 53 261628.5 54 249983.0 55 251352.5 56 252722.0 57 247201.0 58 241680.0 59 234507.0 60 227334.0 61 202751.0 62 178168.0 63 159965.0 64 124170.0 65 106578.0 66 92732.0 67 78886.0 68 64946.5 69 51007.0 70 43270.0 71 35533.0 72 27645.5 73 19758.0 74 16627.5 75 13497.0 76 10222.0 77 6947.0 78 5329.0 79 3711.0 80 3049.0 81 2387.0 82 1681.0 83 975.0 84 848.5 85 722.0 86 466.5 87 211.0 88 167.0 89 87.0 90 51.0 91 37.5 92 24.0 93 22.0 94 20.0 95 29.0 96 38.0 97 29.0 98 20.0 99 14.0 100 8.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 3163817.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 17.19060706065665 #Duplication Level Percentage of deduplicated Percentage of total 1 69.69462904568216 11.980929821625498 2 11.738849781281091 4.03595907868157 3 4.662402054869446 2.404485650521763 4 2.4632675072239527 1.6938025520788071 5 1.484236068383075 1.2757459518413676 6 1.01744165012103 1.0494263768626035 7 0.7461829489286173 0.8979136509275721 8 0.555672286344242 0.764187514323244 9 0.4381513746147825 0.6778879302680366 >10 4.073613388699022 15.815426135799818 >50 1.706894033859648 21.210206914646733 >100 1.405173630447368 34.563945633934914 >500 0.008682914912917878 1.029290422603938 >1k 0.0038796002802399024 1.6093262226174625 >5k 9.237143524380721E-4 0.9914661432666566 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCTGCTT 8254 0.26088740277961714 Illumina Single End Adapter 1 (95% over 22bp) GTCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCTGC 6544 0.20683876469467102 No Hit GCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCTGCT 5974 0.18882255199968898 Illumina Single End Adapter 1 (95% over 21bp) TGCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCTGC 5328 0.16840417761204265 No Hit GCCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCTGC 5119 0.16179823295721593 No Hit GGCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCTGC 4507 0.14245450985312993 No Hit ATCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCTGC 4464 0.14109539205333305 No Hit GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGGC 4349 0.1374605421236437 No Hit TTCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCTGC 4293 0.13569052824483843 No Hit GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGACG 3655 0.11552501298273572 No Hit TTGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAG 3325 0.10509457405406192 No Hit AGCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCTGC 3194 0.10095400587328535 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.2756796616239182 0.0 2 0.0 0.0 0.0 0.6165021554660083 0.0 3 0.0 0.0 0.0 2.1023971993323256 0.0 4 3.160739069295095E-5 0.0 0.0 2.4439150557696605 0.0 5 3.160739069295095E-5 0.0 0.0 3.0615234699099223 0.0 6 3.160739069295095E-5 0.0 0.0 5.04163167465122 0.0 7 3.160739069295095E-5 0.0 0.0 5.401418602909081 0.0 8 3.160739069295095E-5 0.0 0.0 5.9299573900766065 0.0 9 3.160739069295095E-5 0.0 0.0 6.330991963188769 0.0 10 3.160739069295095E-5 0.0 0.0 7.6086259097792315 0.0 11 3.160739069295095E-5 0.0 0.0 8.627079252687498 0.0 12 3.160739069295095E-5 0.0 0.0 9.043032514206732 0.0 13 6.32147813859019E-5 0.0 0.0 9.255054890975046 0.0 14 6.32147813859019E-5 0.0 0.0 9.433763077952992 0.0 15 6.32147813859019E-5 0.0 0.0 9.62397635514317 0.0 16 9.482217207885286E-5 0.0 0.0 9.986892415079634 0.0 17 9.482217207885286E-5 0.0 0.0 10.45588287818164 0.0 18 1.264295627718038E-4 0.0 0.0 10.953130348563144 0.0 19 1.264295627718038E-4 0.0 0.0 11.358684778544397 0.0 20 1.264295627718038E-4 0.0 0.0 11.838579791435471 0.0 21 1.264295627718038E-4 0.0 0.0 12.557711144481491 0.0 22 1.264295627718038E-4 0.0 0.0 13.188910736619722 0.0 23 1.264295627718038E-4 0.0 0.0 13.750984965312469 0.0 24 1.8964434415770571E-4 0.0 0.0 14.222756878795455 0.0 25 1.8964434415770571E-4 0.0 0.0 14.634885646040843 0.0 26 1.8964434415770571E-4 0.0 0.0 15.005103013227377 0.0 27 1.8964434415770571E-4 0.0 0.0 15.43249815017746 0.0 28 1.8964434415770571E-4 0.0 0.0 15.799428348731928 0.0 29 1.8964434415770571E-4 0.0 0.0 16.252709938659535 0.0 30 2.2125173485065667E-4 0.0 0.0 16.765034134401578 0.0 31 2.2125173485065667E-4 0.0 0.0 17.183357950222785 0.0 32 2.2125173485065667E-4 0.0 0.0 17.681079531464682 0.0 33 2.2125173485065667E-4 0.0 0.0 18.149058558064514 0.0 34 2.2125173485065667E-4 0.0 0.0 18.70149253259591 0.0 35 2.2125173485065667E-4 0.0 0.0 19.32226168580547 0.0 36 2.2125173485065667E-4 0.0 0.0 19.77706043048634 0.0 37 2.2125173485065667E-4 0.0 0.0 20.254426852121977 0.0 38 5.373256417801662E-4 0.0 0.0 20.936862024573482 0.0 39 5.373256417801662E-4 0.0 0.0 22.394563275941685 0.0 40 5.373256417801662E-4 0.0 0.0 22.984262364100072 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCCCGTA 20 6.3131395E-4 46.000004 28 TCGTATA 20 6.3131395E-4 46.000004 38 ACGTACT 20 6.3131395E-4 46.000004 37 TCGTTAC 25 3.4185236E-5 46.0 26 ACCGTAA 25 3.4185236E-5 46.0 19 TACGTAG 45 3.110472E-10 46.0 1 CGATGTA 35 1.0203257E-7 45.999996 34 TCTTACG 55 4.7293724E-11 41.81818 1 TACTATT 1300 0.0 41.399998 46 CGATAGT 50 8.731149E-10 41.399998 24 TTTGTCG 335 0.0 40.50746 1 AACGTAT 40 2.9127295E-7 40.250004 40 CGCTTAT 40 2.9127295E-7 40.250004 22 ACTAATC 1805 0.0 39.62881 10 ATTATAC 1405 0.0 39.615658 42 TACGGGT 105 0.0 39.428574 4 TCGATAG 70 0.0 39.42857 1 CGTAGAA 35 5.3761014E-6 39.42857 20 GCGTAAT 35 5.3761014E-6 39.42857 24 TACCGTA 35 5.3761014E-6 39.42857 42 >>END_MODULE