SRR1545604_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545604_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2153467
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ACTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTGC	5687	0.26408577424218715	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4407	0.20464673942066444	No Hit
GGGACTGTCTAGGGCACTCAGTGCCTCAAGTGGCAGGCAGCATAGAGAACA	2965	0.1376849517545428	No Hit
ATCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTG	2921	0.13564173493255294	No Hit
ATGCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCT	2282	0.10596865426774592	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGGTCG	25	3.8919443E-5	45.000004	2
CCGTCGA	30	2.166389E-6	45.000004	5
GTAATCG	25	3.8919443E-5	45.000004	34
CGTTACG	30	2.166389E-6	45.000004	3
TGCGATT	140	0.0	45.000004	2
TATACGA	25	3.8919443E-5	45.000004	40
TAAGTCG	20	7.034663E-4	45.0	21
CGATTAC	20	7.034663E-4	45.0	39
CGCACAC	20	7.034663E-4	45.0	19
TCGACGA	20	7.034663E-4	45.0	33
TCGAATT	45	3.8562575E-10	45.0	2
ATGCGAT	340	0.0	44.338238	1
ATGCGTA	140	0.0	43.39286	1
ATCGTAC	80	0.0	42.1875	1
CCGCGTA	45	1.929584E-8	40.0	43
TAATGCG	90	0.0	40.0	3
ATTAGTA	575	0.0	39.913044	1
CGGATAA	170	0.0	39.705883	13
ATTAGTT	1160	0.0	38.40517	1
ATTGCGA	340	0.0	38.382355	1