SRR1545603_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545603_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1765171
Sequences flagged as poor quality	0
Sequence length	52
%GC	51

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTGCTT	5100	0.2889238493041184	Illumina Single End Adapter 1 (95% over 22bp)
GTCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTGC	3932	0.22275462263995952	No Hit
GCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTGCT	3321	0.188140412458623	Illumina Single End Adapter 1 (95% over 21bp)
TGCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTGC	3282	0.18593099478747385	No Hit
GCCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTGC	3280	0.1858176913171585	No Hit
TTCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTGC	3163	0.17918943830371106	No Hit
ATCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTGC	2864	0.16225056949156766	No Hit
GGCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTGC	2767	0.15675535118127365	No Hit
ACCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTGC	1832	0.10378597880885194	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AAATCCG	35	1.0199801E-7	46.000004	41
GACGTAT	20	6.312377E-4	46.000004	12
ATTACGA	20	6.312377E-4	46.000004	41
CGATTAC	20	6.312377E-4	46.000004	37
ACTCGAT	30	1.8619739E-6	46.0	12
GTATACG	30	1.8619739E-6	46.0	1
TAATGCG	25	3.417906E-5	46.0	1
GCGTAAT	25	3.417906E-5	46.0	46
TTGTACG	140	0.0	42.714287	1
CTATGCG	60	1.8189894E-12	42.166668	1
TCGTAAG	60	1.8189894E-12	42.166668	1
CCGATAG	50	8.731149E-10	41.399998	11
CCGATCA	45	1.589251E-8	40.888885	38
CGGATAA	125	0.0	40.48	11
ACGTAGG	75	0.0	39.86667	2
TACGGGA	660	0.0	39.727272	4
CGATTAG	35	5.3747463E-6	39.428574	1
TACGCGA	35	5.3747463E-6	39.428574	29
TCGTTAG	105	0.0	39.42857	1
TTGGGAC	2750	0.0	38.472725	5