FastQCFastQC Report
Thu 26 May 2016
SRR1545602_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1545602_1.fastq.gz
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences849551
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTCTGC45020.5299269849602908No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT24880.2928605816484237No Hit
ATCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTCTG19350.22776737358910765No Hit
ATGCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTCT16890.19881090128785675No Hit
CTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTCTGCT16690.1964567165479177No Hit
ATGTCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTC14500.17067839364558454No Hit
ATTGCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTC13660.16079081773784032No Hit
ATGCCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTC12460.14666570929820574No Hit
ATTAGTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTT11650.1371312611014524No Hit
CCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTCTGC11620.13677813339046155No Hit
ATGTTTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTT11480.13513020407250417No Hit
ATATCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTC11250.13242289162157422No Hit
GCCCTGCTAGAGGACTTGCGTCTGTATCTATGCTCTGCCCCATGCAGCTCC10380.12218218800283914No Hit
ATGGCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTC10200.12006342173689397No Hit
ATTTCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTC9760.11488421530902794No Hit
ATTGTTCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTT9180.10805707956320455No Hit
ATAGTTTAGGGAAGGCATCATTATAACTAAAAATGGGATATATTCCTTATA8810.10370183779431724No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCACGAT302.1648302E-645.00000442
GTCATCG302.1648302E-645.00000443
GACAGTA302.1648302E-645.00000411
AAACTCG207.0322456E-445.00000443
ACTATGT207.0322456E-445.00000445
ACTATCC302.1648302E-645.00000443
CCTTAGT207.0322456E-445.00000425
GATACGA207.0322456E-445.00000413
GGTACGT207.0322456E-445.00000428
CCGGGTA207.0322456E-445.00000435
GTACCAC207.0322456E-445.00000411
TACCCGG302.1648302E-645.00000419
CGAACGG207.0322456E-445.00000413
CGAACAC207.0322456E-445.00000417
CGTATTA302.1648302E-645.00000426
ACGCCCG302.1648302E-645.00000428
CTCCGTC207.0322456E-445.00000422
CTACTAT406.8121153E-945.00000435
ATCTAAT302.1648302E-645.0000041
GATCGCG207.0322456E-445.00000411