##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545597_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1661717 Sequences flagged as poor quality 0 Sequence length 52 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.558580071095136 33.0 31.0 34.0 31.0 34.0 2 32.96180456720368 34.0 31.0 34.0 31.0 34.0 3 33.03306700238368 34.0 33.0 34.0 31.0 34.0 4 36.416174956385476 37.0 37.0 37.0 35.0 37.0 5 36.39305609799984 37.0 37.0 37.0 35.0 37.0 6 36.39358747608648 37.0 37.0 37.0 35.0 37.0 7 36.46626050043419 37.0 37.0 37.0 35.0 37.0 8 36.51104249399868 37.0 37.0 37.0 35.0 37.0 9 38.323579767192605 39.0 39.0 39.0 37.0 39.0 10 38.08446263713978 39.0 39.0 39.0 35.0 39.0 11 37.93781131203448 39.0 38.0 39.0 35.0 39.0 12 37.526340526094394 39.0 37.0 39.0 35.0 39.0 13 37.404390759678094 39.0 37.0 39.0 35.0 39.0 14 38.502282879696125 41.0 38.0 41.0 34.0 41.0 15 38.63750145181159 41.0 38.0 41.0 35.0 41.0 16 38.76337306532942 41.0 38.0 41.0 35.0 41.0 17 38.76980917930069 40.0 38.0 41.0 35.0 41.0 18 38.77232464974481 40.0 38.0 41.0 35.0 41.0 19 38.744593092566305 40.0 38.0 41.0 35.0 41.0 20 38.61168417967681 40.0 38.0 41.0 35.0 41.0 21 38.569287068736735 40.0 37.0 41.0 35.0 41.0 22 38.71790804330701 40.0 38.0 41.0 35.0 41.0 23 38.74320838024766 40.0 38.0 41.0 35.0 41.0 24 38.69724688379549 40.0 37.0 41.0 35.0 41.0 25 38.62728190179194 40.0 37.0 41.0 35.0 41.0 26 38.536575120793735 40.0 37.0 41.0 35.0 41.0 27 38.43108904825551 40.0 37.0 41.0 35.0 41.0 28 38.37942020211624 40.0 36.0 41.0 35.0 41.0 29 38.272558444067194 40.0 36.0 41.0 34.0 41.0 30 38.22332081816579 40.0 36.0 41.0 34.0 41.0 31 38.06801458972858 40.0 36.0 41.0 34.0 41.0 32 38.033665178848146 40.0 35.0 41.0 34.0 41.0 33 38.01919400234817 40.0 35.0 41.0 34.0 41.0 34 37.85512996496997 40.0 35.0 41.0 34.0 41.0 35 37.84698176645 40.0 35.0 41.0 34.0 41.0 36 37.737318689042716 40.0 35.0 41.0 33.0 41.0 37 37.632776820601826 40.0 35.0 41.0 33.0 41.0 38 37.543315739081926 40.0 35.0 41.0 33.0 41.0 39 37.430192385346004 40.0 35.0 41.0 33.0 41.0 40 37.30901049938106 39.0 35.0 41.0 33.0 41.0 41 37.14239608790185 39.0 35.0 41.0 33.0 41.0 42 37.09561014300269 39.0 35.0 41.0 33.0 41.0 43 37.03281545533927 39.0 35.0 41.0 33.0 41.0 44 36.9117075891984 39.0 35.0 41.0 32.0 41.0 45 36.81310656387339 39.0 35.0 41.0 32.0 41.0 46 36.793002659297585 39.0 35.0 41.0 32.0 41.0 47 36.74368138497711 38.0 35.0 41.0 32.0 41.0 48 36.61878165776724 38.0 35.0 40.0 32.0 41.0 49 36.53990420751548 38.0 35.0 40.0 32.0 41.0 50 36.42709679205304 38.0 35.0 40.0 32.0 41.0 51 36.26639373611752 37.0 35.0 40.0 32.0 41.0 52 35.86736790921679 37.0 35.0 40.0 31.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 4.0 10 6.0 11 4.0 12 15.0 13 14.0 14 18.0 15 50.0 16 81.0 17 179.0 18 297.0 19 516.0 20 812.0 21 1371.0 22 2047.0 23 2823.0 24 4028.0 25 5223.0 26 6500.0 27 8299.0 28 10779.0 29 13634.0 30 17187.0 31 22685.0 32 30253.0 33 42560.0 34 104097.0 35 168070.0 36 98185.0 37 146965.0 38 256684.0 39 717547.0 40 782.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.24169217742853 13.78568071458618 45.47669669384137 12.495930414143924 2 26.43452525309665 12.435089729478605 49.10709826041378 12.023286757010972 3 26.085127611982063 13.101629218452961 45.43691856074169 15.376324608823284 4 23.627669452740747 14.039755265186551 47.15664580671678 15.175929475355913 5 24.306003970591863 16.282676292052138 43.75877480942904 15.652544927926956 6 25.174563418440083 18.65022744546755 44.35634948670562 11.818859649386749 7 85.32162817134325 2.8771445438663745 6.937523055971624 4.8637042288187455 8 86.26276315401479 3.061893210456413 7.25394275920629 3.421400876322503 9 79.48056137116008 4.610472180280999 9.17111638142957 6.7378500671293615 10 44.344734993985135 20.613317430103923 15.724759390437724 19.31718818547322 11 36.098445162443426 21.621912756504265 24.129981218221875 18.149660862830434 12 31.346372456922566 22.733654406857482 25.458065362513594 20.461907773706354 13 24.71931141102847 23.509418270379374 32.88923444846505 18.882035870127105 14 19.154946359699036 30.290356300140157 31.95405715895065 18.600640181210156 15 19.030857841618037 22.233689611407957 37.64076554551708 21.094687001456926 16 23.771556769293447 22.117665041640663 33.19831234801112 20.912465841054765 17 24.09688292290444 21.47898829945171 26.893267626196277 27.530861151447567 18 24.3622710726315 22.626115036435205 29.069029202926856 23.94258468800644 19 26.135497199583323 25.22848355044812 26.88724975432038 21.748769495648176 20 26.375610287431616 23.985251399606554 25.24659734479457 24.392540968167264 21 24.78093441903766 24.024307388081123 29.913396805833965 21.281361387047255 22 27.722710906851166 20.12496712737488 27.07476664197333 25.07755532380062 23 26.693714994791534 24.40048455904345 24.331038317595596 24.574762128569425 24 25.7428912383998 21.44877858263471 28.512075160812582 24.29625501815291 25 30.584991307184072 22.23194442856395 23.77480642010643 23.408257844145545 26 23.84148444049137 25.852897936291196 23.56213482801223 26.743482795205196 27 24.796761422071267 23.330446760790196 26.34949272349022 25.523299093648316 28 26.078628310356095 23.422038770741345 26.817984049028805 23.68134886987375 29 24.333325108908436 25.422319203570765 26.083201892981776 24.161153794539022 30 29.496538820990576 23.055851267093015 26.115277150080306 21.3323327618361 31 27.18778227580268 24.45229843589492 26.607779784403725 21.75213950389868 32 27.98888137992209 25.296545681364517 24.58685805103998 22.127714887673413 33 28.902093437089466 24.908934553837987 23.748929571040076 22.440042438032467 34 23.01456866602436 23.425408778991848 28.489086890246657 25.07093566473714 35 24.763001160847484 24.020997558549382 28.734014275595666 22.48198700500747 36 27.098477057164366 26.629985731625784 22.809660128650062 23.461877082559788 37 26.34209074108287 25.83977897560174 24.089059689465774 23.729070593849613 38 24.752409706345908 23.438708275837584 28.987607396445963 22.821274621370545 39 23.138416469230318 25.30840088896003 25.501273682582532 26.05190895922711 40 26.83483409028132 21.869668541634947 28.545353992286294 22.750143375797443 41 23.71312323337849 22.28442027132177 27.12044228951139 26.88201420578835 42 22.717586688948842 24.520841996561387 25.883228010545718 26.878343303944053 43 23.092680642973505 21.72469800814459 27.6984588831913 27.48416246569061 44 27.392630634458214 22.283818484134184 25.465166451327153 24.858384430080452 45 22.666013526972403 22.904983219164272 26.75028299042496 27.67872026343836 46 22.9863448469264 23.960277231321577 25.78784474131275 27.265533180439267 47 23.658300420589065 23.665943117871453 29.801283852786003 22.874472608753475 48 22.634961308092773 23.703554817095814 30.31575171945644 23.345732155354973 49 23.359693618107055 22.223459229218932 26.79680114002565 27.620046012648363 50 21.55108240452496 23.973095298417242 29.364807605627192 25.11101469143061 51 23.393935309080906 24.435207679767373 26.68300318285243 25.487853828299283 52 22.878564761629086 22.527241401514218 27.685339922501846 26.908853914354854 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 209.0 1 167.0 2 125.0 3 113.0 4 101.0 5 149.0 6 197.0 7 256.5 8 316.0 9 402.0 10 488.0 11 762.5 12 1037.0 13 1039.5 14 1032.0 15 1022.0 16 1033.5 17 1045.0 18 1410.5 19 1776.0 20 1734.5 21 1693.0 22 2856.0 23 4019.0 24 4837.5 25 5656.0 26 7330.5 27 9005.0 28 10316.5 29 11628.0 30 12669.5 31 13711.0 32 18988.5 33 24266.0 34 25972.5 35 27679.0 36 32319.5 37 36960.0 38 40526.0 39 54148.5 40 64205.0 41 71315.0 42 78425.0 43 89715.0 44 101005.0 45 112363.0 46 123721.0 47 142095.5 48 160470.0 49 167608.5 50 174747.0 51 158454.0 52 142161.0 53 127222.0 54 112283.0 55 107460.5 56 102638.0 57 98102.0 58 93566.0 59 87746.0 60 81926.0 61 74842.0 62 67758.0 63 58825.5 64 45710.0 65 41527.0 66 35091.0 67 28655.0 68 23848.0 69 19041.0 70 16023.5 71 13006.0 72 10724.5 73 8443.0 74 6759.0 75 5075.0 76 4467.5 77 3860.0 78 2687.5 79 1515.0 80 1140.0 81 765.0 82 626.5 83 488.0 84 402.5 85 317.0 86 202.5 87 88.0 88 66.0 89 26.0 90 8.0 91 8.0 92 8.0 93 6.5 94 5.0 95 3.5 96 2.0 97 1.5 98 1.0 99 2.5 100 4.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 1661717.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 17.262229841208892 #Duplication Level Percentage of deduplicated Percentage of total 1 68.52594455806391 11.829106050472369 2 12.55072424272817 4.333069731032121 3 5.330535349072497 2.7605077911713436 4 2.7536183574139304 1.9013437192260543 5 1.6789666401795431 1.449135401925077 6 1.0851220797270709 1.1238976047611577 7 0.7824309148481711 0.9454551600883531 8 0.5693413321097069 0.7862480746382244 9 0.43332941740697806 0.673220880021276 >10 3.4660102187390254 12.827668338422221 >50 1.2437368276905996 15.842362614841884 >100 1.568371680728433 41.586978255378796 >500 0.005934190645976938 0.7469491470108364 >1k 0.004537910493982365 1.8565265585191892 >5k 0.0013962801519945738 1.3375306724910887 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCTGCTT 6275 0.37762146021253923 TruSeq Adapter, Index 27 (95% over 24bp) GCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCTGCT 5414 0.3258075833610657 Illumina Single End Adapter 1 (95% over 21bp) GTCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCTGC 5381 0.3238216856420197 No Hit TGCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCTGC 5127 0.3085362910772412 TruSeq Adapter, Index 27 (95% over 22bp) GCCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCTGC 4469 0.2689386941338387 No Hit TTCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCTGC 4260 0.25636134191321386 TruSeq Adapter, Index 27 (95% over 22bp) GGCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCTGC 3976 0.23927058578566626 No Hit ATCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCTGC 3771 0.22693394844007733 TruSeq Adapter, Index 27 (95% over 22bp) AGCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCTGC 2667 0.16049664293017404 TruSeq Adapter, Index 27 (95% over 22bp) TCCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCTGC 1870 0.11253420407927463 TruSeq Adapter, Index 27 (95% over 22bp) ACCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCTGC 1746 0.10507204295316229 TruSeq Adapter, Index 27 (95% over 22bp) CTCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCTGC 1679 0.10104006879631128 TruSeq Adapter, Index 27 (95% over 22bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.39988758615335823 0.0 2 0.0 0.0 0.0 0.9444448122032814 0.0 3 0.0 0.0 0.0 3.4151422895715697 0.0 4 0.0 0.0 0.0 3.9255180033663977 0.0 5 0.0 0.0 0.0 4.773375971961531 0.0 6 0.0 0.0 0.0 7.344752445813577 0.0 7 0.0 0.0 0.0 7.67832308389455 0.0 8 0.0 0.0 0.0 8.298705495580776 0.0 9 0.0 0.0 0.0 8.689325559045253 0.0 10 0.0 0.0 0.0 9.976006744830798 0.0 11 6.017871875897039E-5 0.0 0.0 11.148528901130577 0.0 12 6.017871875897039E-5 0.0 0.0 11.625806319607971 0.0 13 6.017871875897039E-5 0.0 0.0 11.866942445675166 0.0 14 6.017871875897039E-5 0.0 0.0 12.03616500282539 0.0 15 6.017871875897039E-5 0.0 0.0 12.241675327387275 0.0 16 6.017871875897039E-5 0.0 0.0 12.739232974086441 0.0 17 6.017871875897039E-5 0.0 0.0 13.360397709116535 0.0 18 6.017871875897039E-5 0.0 0.0 14.035061325123351 0.0 19 6.017871875897039E-5 0.0 0.0 14.457696466967601 0.0 20 6.017871875897039E-5 0.0 0.0 14.963679134293024 0.0 21 6.017871875897039E-5 0.0 0.0 15.680708568306155 0.0 22 6.017871875897039E-5 0.0 0.0 16.304942417992955 0.0 23 6.017871875897039E-5 0.0 0.0 16.93754110958725 0.0 24 1.2035743751794078E-4 0.0 0.0 17.427094986691475 0.0 25 1.2035743751794078E-4 0.0 0.0 17.855687821692865 0.0 26 1.2035743751794078E-4 0.0 0.0 18.263518998722407 0.0 27 1.2035743751794078E-4 0.0 0.0 18.73664408560543 0.0 28 1.2035743751794078E-4 0.0 0.0 19.135628990977406 0.0 29 1.2035743751794078E-4 0.0 0.0 19.61104086917327 0.0 30 1.2035743751794078E-4 0.0 0.0 20.086091675056583 0.0 31 1.2035743751794078E-4 0.0 0.0 20.497894647524216 0.0 32 1.2035743751794078E-4 0.0 0.0 20.964039003031203 0.0 33 1.2035743751794078E-4 0.0 0.0 21.409842951597653 0.0 34 1.2035743751794078E-4 0.0 0.0 21.89536485454503 0.0 35 1.2035743751794078E-4 0.0 0.0 22.431978489718766 0.0 36 1.2035743751794078E-4 0.0 0.0 22.862737758595475 0.0 37 1.2035743751794078E-4 0.0 0.0 23.31961459141358 0.0 38 1.2035743751794078E-4 0.0 0.0 23.830652271114758 0.0 39 1.2035743751794078E-4 0.0 0.0 24.70366494415114 0.0 40 1.2035743751794078E-4 0.0 0.0 25.147362637561027 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGTTAA 20 6.3122704E-4 46.0 11 CGTATCC 25 3.4178178E-5 46.0 39 CGTATAG 20 6.3122704E-4 46.0 1 CAAGTCG 25 3.4178178E-5 46.0 25 CCGATTA 20 6.3122704E-4 46.0 22 CAACGAA 45 3.110472E-10 46.0 39 ACGCATC 40 5.6134013E-9 46.0 36 CGGCATA 30 1.8619085E-6 46.0 29 ATTACGT 20 6.3122704E-4 46.0 16 CGCGATC 25 3.4178178E-5 46.0 36 CGATTAC 20 6.3122704E-4 46.0 27 TAACGAC 20 6.3122704E-4 46.0 11 CCGTCTA 25 3.4178178E-5 46.0 45 CATTACG 20 6.3122704E-4 46.0 19 CCGTAAG 25 3.4178178E-5 46.0 1 TACGAAC 20 6.3122704E-4 46.0 44 TCGCTAC 20 6.3122704E-4 46.0 37 AACGCAT 20 6.3122704E-4 46.0 35 ACTACGT 30 1.8619085E-6 46.0 46 ACTACGG 20 6.3122704E-4 46.0 18 >>END_MODULE