##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545595_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1641974 Sequences flagged as poor quality 0 Sequence length 52 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.51738334468146 33.0 31.0 34.0 31.0 34.0 2 32.92893858246233 34.0 31.0 34.0 31.0 34.0 3 33.002657167531275 34.0 33.0 34.0 31.0 34.0 4 36.39474559280476 37.0 37.0 37.0 35.0 37.0 5 36.37226472526361 37.0 37.0 37.0 35.0 37.0 6 36.371323175641024 37.0 37.0 37.0 35.0 37.0 7 36.473358896060475 37.0 37.0 37.0 35.0 37.0 8 36.5251508245563 37.0 37.0 37.0 35.0 37.0 9 38.32350146835456 39.0 39.0 39.0 37.0 39.0 10 38.05915745316308 39.0 39.0 39.0 35.0 39.0 11 37.86349540248506 39.0 38.0 39.0 35.0 39.0 12 37.55659833834153 39.0 37.0 39.0 35.0 39.0 13 37.50554941795668 39.0 37.0 39.0 35.0 39.0 14 38.85162615242385 41.0 38.0 41.0 35.0 41.0 15 38.87027687405525 41.0 38.0 41.0 35.0 41.0 16 38.92747936325423 41.0 38.0 41.0 35.0 41.0 17 38.863019146466385 41.0 38.0 41.0 35.0 41.0 18 38.8725065074112 41.0 38.0 41.0 35.0 41.0 19 38.83793166030644 40.0 38.0 41.0 35.0 41.0 20 38.78113173533807 40.0 38.0 41.0 35.0 41.0 21 38.740672507603655 40.0 38.0 41.0 35.0 41.0 22 38.82679262887232 41.0 38.0 41.0 35.0 41.0 23 38.829421172320636 41.0 38.0 41.0 35.0 41.0 24 38.76382086439858 41.0 38.0 41.0 35.0 41.0 25 38.70269992094881 40.0 38.0 41.0 35.0 41.0 26 38.60799074772195 40.0 38.0 41.0 35.0 41.0 27 38.52311364248155 40.0 37.0 41.0 35.0 41.0 28 38.47478279193215 40.0 37.0 41.0 35.0 41.0 29 38.41233113313609 40.0 37.0 41.0 35.0 41.0 30 38.36153922047487 40.0 37.0 41.0 34.0 41.0 31 38.327584358826634 40.0 37.0 41.0 34.0 41.0 32 38.24453797684981 40.0 36.0 41.0 34.0 41.0 33 38.214239689544414 40.0 36.0 41.0 34.0 41.0 34 38.13609594305391 40.0 36.0 41.0 34.0 41.0 35 38.064841465212 40.0 36.0 41.0 34.0 41.0 36 37.97798868922407 40.0 36.0 41.0 34.0 41.0 37 37.88145731905621 40.0 35.0 41.0 34.0 41.0 38 37.76485194040831 40.0 35.0 41.0 33.0 41.0 39 37.686281877788566 40.0 35.0 41.0 33.0 41.0 40 37.541473860122025 40.0 35.0 41.0 33.0 41.0 41 37.36499603526 40.0 35.0 41.0 33.0 41.0 42 37.29323545927036 39.0 35.0 41.0 33.0 41.0 43 37.2515685388441 39.0 35.0 41.0 33.0 41.0 44 37.05707033119891 39.0 35.0 41.0 32.0 41.0 45 36.937321175609355 39.0 35.0 41.0 32.0 41.0 46 36.93683213010681 39.0 35.0 41.0 32.0 41.0 47 36.87428302762407 39.0 35.0 41.0 32.0 41.0 48 36.81049699934347 39.0 35.0 41.0 32.0 41.0 49 36.745265150361696 39.0 35.0 41.0 32.0 41.0 50 36.65118022575266 38.0 35.0 41.0 32.0 41.0 51 36.51764705165855 38.0 35.0 41.0 32.0 41.0 52 36.175741516004514 38.0 35.0 40.0 31.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 3.0 9 2.0 10 5.0 11 3.0 12 6.0 13 8.0 14 22.0 15 30.0 16 61.0 17 100.0 18 210.0 19 391.0 20 670.0 21 1144.0 22 1747.0 23 2553.0 24 3479.0 25 4787.0 26 6358.0 27 8253.0 28 10516.0 29 13298.0 30 17289.0 31 21895.0 32 28796.0 33 39496.0 34 85782.0 35 162628.0 36 94031.0 37 137254.0 38 241892.0 39 758030.0 40 1235.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.219538190007878 13.708682354288193 47.48863258492521 12.583146870778709 2 25.593279796147804 12.675231154695506 50.47321090346132 11.258278145695364 3 24.588330874910323 13.610325133041085 46.305848935488626 15.49549505655997 4 22.25772149863518 14.023608169191473 49.353156627327834 14.365513704845508 5 22.906148331215963 16.634368144684387 45.205953322037985 15.253530202061667 6 24.254038127278505 18.608516334607003 44.718795790919955 12.418649747194536 7 86.00075275247964 2.1456490784872355 7.078004889236979 4.775593279796148 8 87.64548037910467 2.2504010416730105 6.904737833851206 3.1993807453711205 9 79.43542345981118 4.250859027000428 9.067317752899863 7.246399760288531 10 42.92108157620035 24.58144891453823 14.417341565700797 18.080127943560615 11 31.225463984204378 22.714184268447614 27.057980211623327 19.002371535724684 12 28.40538278925245 23.043361222528493 27.339409759228833 21.21184622899023 13 22.31271627930771 25.61538733256434 32.95642927354513 19.115467114582813 14 17.670620850269252 31.95556080668756 29.34973391783305 21.024084425210145 15 17.686942667788895 23.60762107073559 36.68590367447962 22.019532586995897 16 21.36215311570098 22.45815098168424 33.702117085897825 22.47757881671695 17 20.445938851650514 23.04488378013294 27.649646096710423 28.85953127150613 18 21.519037451262932 24.07248835852456 29.8209350452565 24.58753914495601 19 23.672969243118345 26.63093325472876 27.599097184242872 22.09700031791003 20 26.162594535601656 22.340183218491887 25.9797049161558 25.517517329750657 21 24.233087734641355 26.509554962502452 28.00909149596766 21.24826580688854 22 28.582486689801424 21.417026091765155 24.71927082889254 25.281216389540884 23 25.937012400927177 25.569406092910118 23.023628875974893 25.46995263018781 24 25.446566145383542 20.33150342210047 29.380367776834472 24.841562655681514 25 28.604046105480357 23.88423933631105 22.914613751496674 24.59710080671192 26 22.41600658719322 27.001767384867236 24.395087863754235 26.187138164185303 27 21.301433518435736 23.85634608099763 24.823596475949074 30.018623924617565 28 21.187363502710763 23.9660311308218 30.317776042738803 24.528829323728633 29 20.948078349596276 24.0816846064554 27.088796777537283 27.88144026641104 30 21.291080126725515 24.77682350634054 26.03719669129962 27.894899675634328 31 23.316020838332395 24.608002319159745 25.597725664352783 26.478251178155077 32 24.472921008493433 24.87621606675867 23.33155092589773 27.319311998850164 33 22.999998781953916 23.83850170587354 25.221897545271727 27.939601966900817 34 20.475659176089266 22.007595735377052 25.500951903014297 32.01579318551938 35 19.899340671654972 22.65699700482468 29.131703668876607 28.31195865464374 36 22.33031704521509 25.38560293890159 26.630141524774448 25.653938491108875 37 23.691848957413455 26.032629018486286 24.323405851736997 25.952116172363265 38 20.777369190985972 23.925774707760294 29.666730411078372 25.63012569017536 39 21.996328809104163 25.985125221227616 23.742945990618608 28.27559997904961 40 24.792840812339296 21.616785649468262 28.489671578234493 25.100701959957956 41 21.059894980066677 22.695791772585924 28.612816037281952 27.631497210065447 42 20.01006106065017 24.61713766478641 25.407040549972166 29.965760724591256 43 21.23285752393156 21.69260901816959 27.757138663584197 29.317394794314648 44 25.01294173963778 22.8186317201125 24.629927148663743 27.53849939158598 45 19.81419925041444 22.961934841842808 26.946589897282173 30.27727601046058 46 19.802566910316486 24.215852382559042 25.734146825711 30.24743388141347 47 20.765554143975486 23.593187224645458 30.084398413129566 25.5568602182495 48 19.738193174800575 21.0982025293945 32.478041674228706 26.685562621576224 49 19.73423452502902 21.121345404982055 27.39586619520163 31.748553874787298 50 19.001945219595438 21.62281497758186 31.738870408423033 27.63636939439967 51 21.35557566684978 21.616481137947375 28.87402601990044 28.15391717530241 52 20.400201221213006 19.589408845694265 28.907522287198212 31.102867645894516 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 260.0 1 197.0 2 134.0 3 121.0 4 108.0 5 159.5 6 211.0 7 262.5 8 314.0 9 425.0 10 536.0 11 598.0 12 660.0 13 753.0 14 1243.0 15 1640.0 16 1447.0 17 1254.0 18 1834.0 19 2414.0 20 2241.5 21 2069.0 22 2517.0 23 2965.0 24 4204.0 25 5443.0 26 7415.0 27 9387.0 28 10356.0 29 11325.0 30 14639.5 31 17954.0 32 21038.0 33 24122.0 34 30207.0 35 36292.0 36 40776.5 37 45261.0 38 45852.0 39 55404.0 40 64365.0 41 71800.5 42 79236.0 43 84457.0 44 89678.0 45 96961.5 46 104245.0 47 117823.5 48 131402.0 49 154575.5 50 177749.0 51 180979.5 52 184210.0 53 161592.0 54 138974.0 55 117864.5 56 96755.0 57 90126.5 58 83498.0 59 81968.0 60 80438.0 61 70145.0 62 59852.0 63 52224.0 64 39255.5 65 33915.0 66 28447.5 67 22980.0 68 19507.5 69 16035.0 70 13256.5 71 10478.0 72 8256.0 73 6034.0 74 4779.0 75 3524.0 76 2800.0 77 2076.0 78 1617.5 79 1159.0 80 835.0 81 511.0 82 405.0 83 299.0 84 239.5 85 180.0 86 111.5 87 43.0 88 57.0 89 37.5 90 4.0 91 3.0 92 2.0 93 3.0 94 4.0 95 12.0 96 20.0 97 11.0 98 2.0 99 1.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 1641974.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 17.568061051560903 #Duplication Level Percentage of deduplicated Percentage of total 1 67.78251046510232 11.908072820789835 2 12.26731446665314 4.310258589777173 3 5.65144804219631 2.9785495270508737 4 3.0243693131506504 2.1252921894359176 5 1.9183160989304227 1.685054717110091 6 1.252741162065969 1.3204939930186979 7 0.8950953560264238 1.10075629031486 8 0.6692001535369271 0.9405239322440534 9 0.4868708333385044 0.7698038871883662 >10 3.366085039695884 12.539712419988394 >50 1.1971454058681938 15.474493869977628 >100 1.4767903142440992 40.63119932927706 >500 0.005883626749972194 0.6544759821984933 >1k 0.004499243985272855 1.801207403999272 >5k 0.0017304784558741747 1.7601050476293185 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCCTACCCTCTCGTATGCCGTCTTCTGCTT 6640 0.4043912997404344 TruSeq Adapter, Index 16 (96% over 26bp) TGCTGTCTCTTATACACATCTGACGCCTACCCTCTCGTATGCCGTCTTCTGC 5939 0.3616987845118132 TruSeq Adapter, Index 16 (95% over 24bp) GTCTGTCTCTTATACACATCTGACGCCTACCCTCTCGTATGCCGTCTTCTGC 5591 0.3405047826579471 TruSeq Adapter, Index 16 (100% over 23bp) GCTGTCTCTTATACACATCTGACGCCTACCCTCTCGTATGCCGTCTTCTGCT 5552 0.3381295927950138 TruSeq Adapter, Index 16 (100% over 24bp) TTCTGTCTCTTATACACATCTGACGCCTACCCTCTCGTATGCCGTCTTCTGC 5226 0.31827544163305876 TruSeq Adapter, Index 16 (95% over 24bp) GCCTGTCTCTTATACACATCTGACGCCTACCCTCTCGTATGCCGTCTTCTGC 4407 0.26839645451146 TruSeq Adapter, Index 16 (100% over 23bp) ATCTGTCTCTTATACACATCTGACGCCTACCCTCTCGTATGCCGTCTTCTGC 4200 0.25578967754666027 TruSeq Adapter, Index 16 (95% over 24bp) GGCTGTCTCTTATACACATCTGACGCCTACCCTCTCGTATGCCGTCTTCTGC 3905 0.2378234978142163 TruSeq Adapter, Index 16 (100% over 23bp) AGCTGTCTCTTATACACATCTGACGCCTACCCTCTCGTATGCCGTCTTCTGC 3230 0.19671444249421732 TruSeq Adapter, Index 16 (95% over 24bp) ACCTGTCTCTTATACACATCTGACGCCTACCCTCTCGTATGCCGTCTTCTGC 2479 0.15097681205670735 TruSeq Adapter, Index 16 (95% over 24bp) TCCTGTCTCTTATACACATCTGACGCCTACCCTCTCGTATGCCGTCTTCTGC 2018 0.1229008498307525 TruSeq Adapter, Index 16 (95% over 24bp) CTCTGTCTCTTATACACATCTGACGCCTACCCTCTCGTATGCCGTCTTCTGC 1919 0.11687152171715265 TruSeq Adapter, Index 16 (95% over 24bp) CCTGTCTCTTATACACATCTGACGCCTACCCTCTCGTATGCCGTCTTCTGCT 1842 0.11218204429546388 TruSeq Adapter, Index 16 (100% over 24bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.45938608041296636 0.0 2 0.0 0.0 0.0 1.07248957657064 0.0 3 0.0 0.0 0.0 3.9667497780111014 0.0 4 0.0 0.0 0.0 4.5734585322301085 0.0 5 0.0 0.0 0.0 5.549844272808217 0.0 6 0.0 0.0 0.0 8.556469225456675 0.0 7 0.0 0.0 0.0 8.92084771135231 0.0 8 0.0 0.0 0.0 9.644610694201004 0.0 9 6.090230417777626E-5 0.0 0.0 10.14017274329557 0.0 10 6.090230417777626E-5 0.0 0.0 11.670647647283086 0.0 11 6.090230417777626E-5 0.0 0.0 13.000936677438254 0.0 12 6.090230417777626E-5 0.0 0.0 13.547047639000374 0.0 13 1.2180460835555253E-4 0.0 0.0 13.813373415169789 0.0 14 1.2180460835555253E-4 0.0 0.0 13.960330675150765 0.0 15 1.2180460835555253E-4 0.0 0.0 14.185973712129424 0.0 16 1.2180460835555253E-4 0.0 0.0 14.737078662634122 0.0 17 1.8270691253332878E-4 0.0 0.0 15.483314595724414 0.0 18 1.8270691253332878E-4 0.0 0.0 16.308236305812393 0.0 19 1.8270691253332878E-4 0.0 0.0 16.83339687473736 0.0 20 1.8270691253332878E-4 0.0 0.0 17.411298839080278 0.0 21 1.8270691253332878E-4 0.0 0.0 18.28183637499741 0.0 22 1.8270691253332878E-4 0.0 0.0 19.03069110716735 0.0 23 1.8270691253332878E-4 0.0 0.0 19.855856426472037 0.0 24 1.8270691253332878E-4 0.0 0.0 20.478947900514868 0.0 25 1.8270691253332878E-4 0.0 0.0 21.018237804009075 0.0 26 1.8270691253332878E-4 0.0 0.0 21.498026156321597 0.0 27 1.8270691253332878E-4 0.0 0.0 21.966730289273766 0.0 28 1.8270691253332878E-4 0.0 0.0 22.443838940202465 0.0 29 1.8270691253332878E-4 0.0 0.0 22.94792731188192 0.0 30 1.8270691253332878E-4 0.0 0.0 23.48928789371817 0.0 31 1.8270691253332878E-4 0.0 0.0 23.983205580599936 0.0 32 1.8270691253332878E-4 0.0 0.0 24.457269116319747 0.0 33 1.8270691253332878E-4 0.0 0.0 24.934804083377692 0.0 34 1.8270691253332878E-4 0.0 0.0 25.405517992367724 0.0 35 1.8270691253332878E-4 0.0 0.0 25.963565805548686 0.0 36 1.8270691253332878E-4 0.0 0.0 26.45127145740432 0.0 37 2.4360921671110505E-4 0.0 0.0 26.93623650557195 0.0 38 2.4360921671110505E-4 0.0 0.0 27.42217599060643 0.0 39 3.6541382506665755E-4 0.0 0.0 27.96000423880037 0.0 40 3.6541382506665755E-4 0.0 0.0 28.478282847353245 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGACGAA 35 1.01992555E-7 46.000004 41 TGACGTA 35 1.01992555E-7 46.000004 30 CGCTAAT 35 1.01992555E-7 46.000004 41 ACGGTAC 35 1.01992555E-7 46.000004 41 CGTATAG 25 3.4177996E-5 46.0 1 GTCGACC 20 6.3122483E-4 46.0 24 CTATCGC 20 6.3122483E-4 46.0 33 CGCATTA 30 1.8618939E-6 46.0 17 GACCGTA 20 6.3122483E-4 46.0 33 GCACGAC 20 6.3122483E-4 46.0 43 CGTCTAT 25 3.4177996E-5 46.0 24 CGATTAG 25 3.4177996E-5 46.0 42 TACGGGT 50 1.6370905E-11 46.0 4 AAGCGAC 25 3.4177996E-5 46.0 28 GCGCATC 25 3.4177996E-5 46.0 14 CCTCGAA 25 3.4177996E-5 46.0 22 ATCCGTT 20 6.3122483E-4 46.0 41 TTATACG 40 5.6134013E-9 46.0 1 GTTACGC 25 3.4177996E-5 46.0 22 CCCGTTA 25 3.4177996E-5 46.0 30 >>END_MODULE