SRR1545592_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545592_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1098396
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ACTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGC	6864	0.6249112341996875	TruSeq Adapter, Index 16 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3492	0.3179181278883026	No Hit
ATCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTG	3003	0.2733986649623633	No Hit
ATGCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCT	2715	0.24717861317776102	No Hit
CTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGCT	2433	0.22150481247200463	TruSeq Adapter, Index 16 (95% over 22bp)
ATTGCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTC	2214	0.20156664809413	No Hit
ATGCCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTC	2064	0.18791037112298295	No Hit
ATATCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTC	2027	0.18454182280343337	No Hit
ATGTCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTC	1955	0.1779868098572828	No Hit
ATGGCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTC	1746	0.1589590639441513	No Hit
CCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGC	1744	0.15877698025120265	TruSeq Adapter, Index 13 (95% over 21bp)
ATAGCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTC	1700	0.15477113900633285	No Hit
ATTTCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTC	1478	0.1345598490890353	No Hit
ATACCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTC	1181	0.10752042068616419	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGAATA	35	1.2118653E-7	45.000004	38
CGGGTCG	25	3.8906917E-5	45.000004	3
AACGTAA	25	3.8906917E-5	45.000004	29
ACTATGC	25	3.8906917E-5	45.000004	20
TCGTTAC	35	1.2118653E-7	45.000004	2
ACCGGTA	25	3.8906917E-5	45.000004	2
TACCCGC	25	3.8906917E-5	45.000004	42
CGAACAG	25	3.8906917E-5	45.000004	3
TCACCGA	25	3.8906917E-5	45.000004	14
GTCGAGA	25	3.8906917E-5	45.000004	33
GTCGAAC	25	3.8906917E-5	45.000004	45
TTAGCGA	70	0.0	45.000004	2
CGTTGAA	35	1.2118653E-7	45.000004	41
GCTATGC	25	3.8906917E-5	45.000004	34
CCGGATC	35	1.2118653E-7	45.000004	40
CCGGATA	25	3.8906917E-5	45.000004	21
TCTTACG	25	3.8906917E-5	45.000004	15
CTCCCGT	25	3.8906917E-5	45.000004	15
GGTCCGT	50	2.1827873E-11	45.000004	10
CCGTGCA	25	3.8906917E-5	45.000004	42