##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545591_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 921350 Sequences flagged as poor quality 0 Sequence length 52 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.567101535789874 33.0 31.0 34.0 31.0 34.0 2 32.959394366961526 34.0 31.0 34.0 31.0 34.0 3 33.01494980192109 34.0 33.0 34.0 31.0 34.0 4 36.381423997395125 37.0 37.0 37.0 35.0 37.0 5 36.3662223910566 37.0 37.0 37.0 35.0 37.0 6 36.36581212351441 37.0 37.0 37.0 35.0 37.0 7 36.47976447604059 37.0 37.0 37.0 35.0 37.0 8 36.5309209312422 37.0 37.0 37.0 35.0 37.0 9 38.331880392901724 39.0 39.0 39.0 37.0 39.0 10 38.09660932327563 39.0 39.0 39.0 35.0 39.0 11 37.89769577250773 39.0 38.0 39.0 35.0 39.0 12 37.406263634883594 39.0 37.0 39.0 35.0 39.0 13 37.281794106474194 39.0 37.0 39.0 35.0 39.0 14 38.54664351223748 40.0 37.0 41.0 35.0 41.0 15 38.602680848754545 40.0 37.0 41.0 35.0 41.0 16 38.70289792152819 40.0 37.0 41.0 35.0 41.0 17 38.67314918326369 40.0 37.0 41.0 35.0 41.0 18 38.68502849080154 40.0 36.0 41.0 35.0 41.0 19 38.64341781082108 40.0 36.0 41.0 35.0 41.0 20 38.57223422152276 40.0 36.0 41.0 35.0 41.0 21 38.502164215553265 40.0 36.0 41.0 35.0 41.0 22 38.60384870027677 40.0 36.0 41.0 35.0 41.0 23 38.63494546046562 40.0 36.0 41.0 35.0 41.0 24 38.588597167200305 40.0 36.0 41.0 35.0 41.0 25 38.540168231399576 40.0 36.0 41.0 35.0 41.0 26 38.44002170727737 40.0 36.0 41.0 35.0 41.0 27 38.37794866228903 40.0 36.0 41.0 35.0 41.0 28 38.37737124871113 40.0 36.0 41.0 35.0 41.0 29 38.33913170890541 40.0 36.0 41.0 35.0 41.0 30 38.2895436044934 40.0 36.0 41.0 35.0 41.0 31 38.209581592228794 40.0 35.0 41.0 35.0 41.0 32 38.14244206870353 40.0 35.0 41.0 34.0 41.0 33 38.10509361263364 40.0 35.0 41.0 34.0 41.0 34 38.01136810115591 40.0 35.0 41.0 34.0 41.0 35 37.952560916047105 40.0 35.0 41.0 34.0 41.0 36 37.920329950615944 40.0 35.0 41.0 34.0 41.0 37 37.88125685135942 40.0 35.0 41.0 34.0 41.0 38 37.81309165897867 40.0 35.0 41.0 34.0 41.0 39 37.74472893037391 40.0 35.0 41.0 34.0 41.0 40 37.615743202908774 40.0 35.0 41.0 34.0 41.0 41 37.4854398437076 39.0 35.0 41.0 34.0 41.0 42 37.49664731101102 39.0 35.0 41.0 34.0 41.0 43 37.42823031421284 39.0 35.0 41.0 33.0 41.0 44 37.34040049926738 39.0 35.0 41.0 33.0 41.0 45 37.248549411190105 39.0 35.0 41.0 33.0 41.0 46 37.279792695501165 39.0 35.0 41.0 33.0 41.0 47 37.26317686004233 39.0 35.0 41.0 33.0 41.0 48 37.200891083735826 39.0 35.0 41.0 33.0 41.0 49 37.20245509306995 39.0 35.0 41.0 33.0 41.0 50 37.10902480056439 39.0 35.0 41.0 33.0 41.0 51 36.98475714983448 38.0 35.0 41.0 33.0 41.0 52 36.66057849894177 38.0 35.0 40.0 32.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 4.0 12 3.0 13 2.0 14 7.0 15 15.0 16 29.0 17 40.0 18 101.0 19 164.0 20 320.0 21 459.0 22 771.0 23 1103.0 24 1640.0 25 2230.0 26 2864.0 27 3602.0 28 4840.0 29 6554.0 30 8310.0 31 10890.0 32 14461.0 33 20622.0 34 48600.0 35 129500.0 36 47789.0 37 67594.0 38 120008.0 39 428208.0 40 619.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.477994247571495 14.57535138655234 47.30666956097031 11.639984804905845 2 24.95284093992511 13.21332826830195 49.73690779833939 12.096922993433548 3 25.525587453193683 14.115591251967222 44.748792532696584 15.610028762142509 4 22.53313073207793 14.199055733434635 49.051826124708306 14.21598740977913 5 23.603408042546263 17.200846583817224 44.07673522548434 15.119010148152167 6 23.388180387474904 17.89330873175232 45.53904596515982 13.179464915612959 7 83.38155966787866 2.6123622944592175 8.052097465675367 5.953980571986758 8 85.4477668638411 2.6262549519726486 8.222282520214902 3.7036956639713465 9 77.22483312530525 4.207521571606882 10.315840885656916 8.251804417430945 10 44.366418841916754 22.672708525533185 15.092310196993541 17.86856243555652 11 36.99191403918164 21.426276659250014 25.973300048841374 15.608509252726977 12 32.391490747273025 25.243609920225758 23.399793780865036 18.965105551636185 13 21.661583545883758 30.23009714006621 31.47012535952678 16.638193954523253 14 15.446138818038749 37.981765887013616 28.034514571009932 18.5375807239377 15 14.571769685787162 24.75660715254789 40.90215444727845 19.769468714386498 16 17.963640310414068 23.648016497530797 38.60281109241873 19.785532099636402 17 18.266782438812612 22.405600477560103 27.810278395832206 31.517338687795082 18 19.826016171921637 24.761925435502253 31.066478536929505 24.34557985564661 19 24.385955391545018 26.355890812394854 28.602811092418733 20.655342703641395 20 27.883323384164544 22.272534867314267 25.108265045856626 24.73587670266457 21 22.37640418950453 28.488956422640687 28.48776252238563 20.64687686546915 22 25.60981168936886 22.512183209420957 25.559450805882673 26.318554295327505 23 24.432843110652847 28.476149128995498 21.374179193574648 25.71682856677701 24 24.64514028327997 20.265045856623434 30.983556737396214 24.106257122700388 25 26.88240082487654 23.01481521680143 26.400716340153036 23.70206761816899 26 19.818852770391274 29.375481630216534 25.965051283442776 24.840614315949423 27 18.815325337819505 28.100287621425085 27.781299180550278 25.30308786020513 28 20.05709013946926 24.83290823248494 30.86818255820264 24.241819069843164 29 18.178650892711783 26.632658598795246 29.955608617789114 25.233081890703858 30 20.33678840831389 26.005860964888477 32.28707874314864 21.370271883648996 31 25.413360829217996 25.86465512563087 22.39073099256526 26.33125305258588 32 25.47034243230043 27.788679654854292 23.33890486785695 23.402073044988335 33 25.19324903673957 27.46600097682748 24.966407988278068 22.374341998154883 34 21.622944592174527 24.855483800944267 25.249253812340587 28.27231779454062 35 19.104249199544146 23.302545178271014 29.354425571172737 28.238780051012103 36 23.718131003418897 27.665382319422587 22.880121560753242 25.736365116405274 37 22.860367938351335 28.268301948228142 25.110652846366744 23.76067726705378 38 21.41824496662506 26.311607966570794 29.93932815976556 22.330818907038584 39 21.06810658273186 28.435773593097085 24.541922179410648 25.954197644760406 40 26.127964400065125 23.39545232539209 27.613284853747217 22.863298420795573 41 20.182883811797904 23.43593639767732 27.72475172301514 28.65642806750963 42 19.974059803549142 25.809735713898085 24.620502523470993 29.595701959081783 43 20.586964779942477 21.63629456775384 28.481033266402562 29.29570738590112 44 25.71194442936995 23.93726596841591 25.722580995278665 24.628208606935477 45 19.718565148966192 25.748846800889996 27.194551473381452 27.33803657676236 46 20.219894719704783 26.43479676561567 24.749335214630705 28.595973300048843 47 21.443968090302274 24.847126499158843 29.46632658598795 24.242578824550932 48 19.988712215770338 20.916698323112822 33.89667335974386 25.197916101372986 49 20.583166006403648 20.314646985401854 28.103326640256142 30.998860367938352 50 18.838877733760242 23.814836924078797 31.059423671785968 26.286861670374996 51 21.065935854995388 24.531068540728278 27.814945460465623 26.588050143810715 52 20.16530091713247 20.73348890215445 29.729961469582676 29.371248711130406 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 371.0 1 284.5 2 198.0 3 171.0 4 144.0 5 155.0 6 166.0 7 265.5 8 365.0 9 436.0 10 507.0 11 520.0 12 533.0 13 660.0 14 855.0 15 923.0 16 924.0 17 925.0 18 1241.0 19 1557.0 20 1552.0 21 1547.0 22 1474.5 23 1402.0 24 2314.0 25 3226.0 26 3533.5 27 3841.0 28 5257.5 29 6674.0 30 7717.5 31 8761.0 32 10376.5 33 11992.0 34 14372.5 35 16753.0 36 18991.5 37 21230.0 38 24772.0 39 36881.5 40 45449.0 41 55327.0 42 65205.0 43 68578.5 44 71952.0 45 79957.0 46 87962.0 47 98943.0 48 109924.0 49 110756.0 50 111588.0 51 94818.0 52 78048.0 53 66189.5 54 54331.0 55 49085.5 56 43840.0 57 38852.0 58 33864.0 59 32974.5 60 32085.0 61 29479.0 62 26873.0 63 22114.5 64 15091.0 65 12826.0 66 10224.0 67 7622.0 68 6446.0 69 5270.0 70 3714.0 71 2158.0 72 2306.0 73 2454.0 74 1786.0 75 1118.0 76 854.5 77 591.0 78 413.5 79 236.0 80 166.5 81 97.0 82 109.5 83 122.0 84 138.0 85 154.0 86 80.0 87 6.0 88 4.0 89 1.0 90 0.0 91 0.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 921350.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 16.860502087624134 #Duplication Level Percentage of deduplicated Percentage of total 1 64.50474189477941 10.875823353785844 2 13.034005554283562 4.395197557162051 3 6.293035315727044 3.183112052349247 4 3.6443524908081373 2.4578245111723525 5 2.302401463779499 1.940982234330155 6 1.5231717682060104 1.5408864466588548 7 1.1002516707793506 1.2985556914461027 8 0.8089978487090803 1.0912087933634307 9 0.6186541309130036 0.9387737339198393 >10 3.716380053604769 12.515011079397523 >50 0.9094643111483086 11.377260059502946 >100 1.5258646976702146 43.01280867472504 >500 0.009661448064606677 1.1046579423019516 >1k 0.008373254989325788 3.706338076368788 >5k 6.440965376404452E-4 0.5615597935158663 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGCTT 5171 0.561241656265263 TruSeq Adapter, Index 16 (95% over 23bp) GCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGCT 4077 0.4425028490801541 TruSeq Adapter, Index 13 (95% over 22bp) GTCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGC 4072 0.44196016714603575 TruSeq Adapter, Index 13 (95% over 21bp) TGCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGC 3985 0.4325175014923753 TruSeq Adapter, Index 16 (95% over 21bp) TTCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGC 3824 0.4150431432137624 TruSeq Adapter, Index 16 (95% over 21bp) GCCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGC 3019 0.3276713518206979 TruSeq Adapter, Index 13 (95% over 21bp) ATCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGC 2994 0.3249579421501058 TruSeq Adapter, Index 16 (95% over 21bp) GGCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGC 2982 0.32365550550822164 TruSeq Adapter, Index 13 (95% over 21bp) AGCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGC 2446 0.2654800021707277 TruSeq Adapter, Index 16 (95% over 21bp) ACCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGC 1525 0.16551798990611602 TruSeq Adapter, Index 16 (95% over 21bp) TCCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGC 1506 0.16345579855646605 TruSeq Adapter, Index 16 (95% over 21bp) CTCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGC 1438 0.15607532425245565 TruSeq Adapter, Index 16 (95% over 21bp) CCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGCT 1198 0.13002659141477182 TruSeq Adapter, Index 13 (95% over 22bp) TCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGCT 1063 0.11537417919357464 TruSeq Adapter, Index 13 (95% over 22bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.5805611331198784 0.0 2 0.0 0.0 0.0 1.3267487925326966 0.0 3 0.0 0.0 0.0 4.803820480816194 0.0 4 0.0 0.0 0.0 5.508330167688718 0.0 5 0.0 0.0 0.0 6.708742605958648 0.0 6 0.0 0.0 0.0 10.281217778260162 0.0 7 0.0 0.0 0.0 10.745536441091875 0.0 8 0.0 0.0 0.0 11.643892114831496 0.0 9 0.0 0.0 0.0 12.264177565528843 0.0 10 0.0 0.0 0.0 14.062734031584089 0.0 11 0.0 0.0 0.0 15.598198295978726 0.0 12 0.0 0.0 0.0 16.278070223042274 0.0 13 0.0 0.0 0.0 16.60563303847615 0.0 14 0.0 0.0 0.0 16.7951375698703 0.0 15 0.0 0.0 0.0 17.06213708145656 0.0 16 0.0 0.0 0.0 17.705106637000053 0.0 17 0.0 0.0 0.0 18.59836110055896 0.0 18 0.0 0.0 0.0 19.60481901557497 0.0 19 3.2560916047104794E-4 0.0 0.0 20.24550930699517 0.0 20 3.2560916047104794E-4 0.0 0.0 20.911705649318936 0.0 21 3.2560916047104794E-4 0.0 0.0 21.938134259510502 0.0 22 3.2560916047104794E-4 0.0 0.0 22.772996146958267 0.0 23 3.2560916047104794E-4 0.0 0.0 23.65290063493786 0.0 24 3.2560916047104794E-4 0.0 0.0 24.308677484126555 0.0 25 3.2560916047104794E-4 0.0 0.0 24.892928854398438 0.0 26 3.2560916047104794E-4 0.0 0.0 25.40077060834645 0.0 27 3.2560916047104794E-4 0.0 0.0 25.914147718022466 0.0 28 3.2560916047104794E-4 0.0 0.0 26.40115048570033 0.0 29 3.2560916047104794E-4 0.0 0.0 26.897378846258206 0.0 30 3.2560916047104794E-4 0.0 0.0 27.440060780376623 0.0 31 3.2560916047104794E-4 0.0 0.0 27.988060997449395 0.0 32 3.2560916047104794E-4 0.0 0.0 28.505996635372007 0.0 33 3.2560916047104794E-4 0.0 0.0 29.0091713246866 0.0 34 3.2560916047104794E-4 0.0 0.0 29.498887502035057 0.0 35 3.2560916047104794E-4 0.0 0.0 30.085635209203886 0.0 36 3.2560916047104794E-4 0.0 0.0 30.56677701199327 0.0 37 4.3414554729473057E-4 0.0 0.0 31.115971129321103 0.0 38 4.3414554729473057E-4 0.0 0.0 31.630867748412655 0.0 39 4.3414554729473057E-4 0.0 0.0 32.18212405709014 0.0 40 4.3414554729473057E-4 0.0 0.0 32.6961523850871 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTATGCG 75 0.0 46.000004 1 TAATCAC 30 1.8609971E-6 46.0 31 TCACGCC 20 6.310799E-4 46.0 16 TCTGCGA 25 3.416624E-5 46.0 21 AACGTTC 25 3.416624E-5 46.0 39 ATCCTAC 25 3.416624E-5 46.0 12 GAAATCG 50 1.6370905E-11 46.0 5 AGCGTAC 25 3.416624E-5 46.0 43 AGCCGAC 20 6.310799E-4 46.0 44 TCGTTCG 20 6.310799E-4 46.0 36 GCCCATG 30 1.8609971E-6 46.0 34 GTCGCAG 135 0.0 46.0 40 TACCCGC 30 1.8609971E-6 46.0 40 TCGCAAT 20 6.310799E-4 46.0 11 AAATCGC 50 1.6370905E-11 46.0 6 CAAACGT 30 1.8609971E-6 46.0 29 GCCCACG 25 3.416624E-5 46.0 39 ACAAACG 30 1.8609971E-6 46.0 14 ACCGGCA 20 6.310799E-4 46.0 4 AGATCAA 20 6.310799E-4 46.0 24 >>END_MODULE