##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545588_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1299302 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.925689331656535 31.0 31.0 34.0 31.0 34.0 2 32.59933179507151 34.0 31.0 34.0 31.0 34.0 3 32.576070074547715 34.0 31.0 34.0 31.0 34.0 4 36.04283299802509 37.0 35.0 37.0 35.0 37.0 5 35.83093230057369 37.0 35.0 37.0 35.0 37.0 6 35.83441801828982 37.0 35.0 37.0 35.0 37.0 7 35.83196901105363 37.0 35.0 37.0 35.0 37.0 8 35.79984791834385 37.0 35.0 37.0 35.0 37.0 9 37.96296165171761 39.0 38.0 39.0 35.0 39.0 10 37.890739797214195 39.0 38.0 39.0 35.0 39.0 11 37.70744753721613 39.0 38.0 39.0 35.0 39.0 12 37.25440659677273 39.0 37.0 39.0 34.0 39.0 13 37.02769563965883 39.0 37.0 39.0 33.0 39.0 14 37.7878122253333 40.0 36.0 41.0 33.0 41.0 15 37.69166444752644 40.0 36.0 41.0 33.0 41.0 16 37.72084473047836 40.0 36.0 41.0 33.0 41.0 17 37.8059758239424 40.0 36.0 41.0 33.0 41.0 18 37.861931252318556 40.0 36.0 41.0 33.0 41.0 19 37.81516383412016 40.0 36.0 41.0 33.0 41.0 20 37.74889594566929 40.0 36.0 41.0 33.0 41.0 21 37.731035586799685 40.0 36.0 41.0 33.0 41.0 22 37.66077247629881 40.0 35.0 41.0 33.0 41.0 23 37.589015486776745 40.0 35.0 41.0 33.0 41.0 24 37.53369193613186 40.0 35.0 41.0 33.0 41.0 25 37.48468331457968 39.0 35.0 41.0 32.0 41.0 26 37.38730256707063 39.0 35.0 41.0 32.0 41.0 27 37.291025489070286 39.0 35.0 41.0 32.0 41.0 28 37.19391488660835 39.0 35.0 41.0 32.0 41.0 29 37.10184237382841 39.0 35.0 41.0 32.0 41.0 30 37.02228889049659 39.0 35.0 41.0 31.0 41.0 31 36.934600269991115 39.0 35.0 41.0 31.0 41.0 32 36.86156798034637 39.0 35.0 41.0 31.0 41.0 33 36.7452740009636 39.0 35.0 41.0 31.0 41.0 34 36.63438831003108 39.0 35.0 41.0 31.0 41.0 35 36.5659654183554 39.0 35.0 41.0 31.0 41.0 36 36.467748067808714 39.0 35.0 41.0 30.0 41.0 37 36.28311970581127 38.0 35.0 41.0 30.0 41.0 38 36.205929029586656 38.0 35.0 41.0 30.0 41.0 39 36.152277145729016 38.0 35.0 40.0 30.0 41.0 40 36.093858086880495 38.0 35.0 40.0 30.0 41.0 41 36.003899786192896 38.0 35.0 40.0 30.0 41.0 42 35.83966852971827 38.0 35.0 40.0 29.0 41.0 43 35.72525709958116 38.0 35.0 40.0 29.0 41.0 44 35.654504495490656 38.0 35.0 40.0 29.0 41.0 45 35.62448991843313 37.0 35.0 40.0 29.0 41.0 46 35.55015385183737 37.0 34.0 40.0 29.0 41.0 47 35.46443475035057 37.0 34.0 40.0 29.0 41.0 48 35.3653923414264 37.0 34.0 40.0 28.0 41.0 49 35.31962392115151 37.0 34.0 40.0 28.0 41.0 50 35.19239407004684 36.0 34.0 40.0 28.0 41.0 51 35.015903154155076 36.0 34.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 3.0 9 6.0 10 16.0 11 8.0 12 14.0 13 21.0 14 31.0 15 40.0 16 76.0 17 173.0 18 300.0 19 578.0 20 1015.0 21 1750.0 22 2808.0 23 4220.0 24 6070.0 25 8706.0 26 11744.0 27 14512.0 28 17184.0 29 20476.0 30 24737.0 31 31298.0 32 39196.0 33 51171.0 34 82574.0 35 153864.0 36 97021.0 37 136992.0 38 206992.0 39 385514.0 40 192.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 2.1562346552225735 91.25545870013283 3.135760585298876 3.4525460593457105 2 3.208953730541475 2.665123273880899 91.45902954047635 2.6668934551012775 3 28.212763468385333 15.636857328011503 43.5691625195682 12.581216684034965 4 26.800466712126976 15.354859763165146 44.110761008603085 13.733912516104802 5 24.244632887504213 13.54565759153761 47.45193957986673 14.757769941091448 6 23.046989845316947 14.670338381684935 47.76156736463116 14.521104408366952 7 22.74767529027124 17.174606057714065 44.25214461303069 15.825574038984008 8 26.023972871587976 19.305442460644255 43.28508691589792 11.385497751869849 9 83.13071172060076 4.11467080016809 8.858140755574917 3.89647672365624 10 83.48066885142946 4.0995088131935455 8.865144516055544 3.554677819321451 11 77.19891141551388 7.115820648317326 9.751081734654452 5.934186201514351 12 43.74902832443882 22.699803432920138 15.60214638321191 17.94902185942914 13 34.43487349361426 23.003658887618123 23.053223961788714 19.5082436569789 14 28.51538749266914 22.780539089449565 28.66277432036586 20.041299097515434 15 22.50623796469181 24.722196995001934 32.36091378293884 20.41065125736742 16 17.689343970839726 32.118629848949666 30.55055714529801 19.641469034912593 17 17.45491040574093 23.537407007762628 39.01617945635426 19.991503130142185 18 22.35115469690649 19.70619609605773 36.62882070527098 21.313828501764796 19 22.85557938031343 19.912460690432248 29.386316653095278 27.845643276159045 20 23.368547112218714 21.643236137556933 31.071760068098104 23.91645668212625 21 26.980101623794926 23.8121699189257 26.871120032140333 22.336608425139037 22 28.56926257328935 21.656166156905783 26.159353252746477 23.61521801705839 23 27.10693895645508 23.856578378236932 27.19006050941198 21.84642215589601 24 28.8391767271966 21.026520393257304 25.52147229820319 24.612830581342905 25 27.663853361266277 23.63053393283471 24.022898448551608 24.682714257347406 26 27.077923377321056 20.36100921879594 29.654768483385695 22.906298920497314 27 27.413488165184074 21.64061934792681 26.745898951898788 24.199993534990323 28 23.84149335566327 26.80723957940494 24.75136650293773 24.599900561994055 29 23.257025695334878 24.975640767119575 27.73181292724863 24.035520610296913 30 24.165051696988073 24.189757269672484 28.45427775836565 23.19091327497379 31 23.132189437097765 24.759601693832533 27.88320190379142 24.225006965278283 32 24.01258521883288 24.81724803009616 27.823862350708307 23.346304400362655 33 28.163583216219166 24.186062978429955 24.465289824844415 23.185063980506456 34 27.325286961768704 24.666628697562228 26.027667162830504 21.98041717783856 35 27.854032395855622 24.44435550780342 23.842570857275675 23.85904123906528 36 25.358538661527497 24.359925560031463 26.25417339463804 24.027362383803 37 25.363233489981546 23.24517317759843 28.40325036057822 22.988342971841806 38 27.862190622349537 25.63437907430297 23.768454139222445 22.734976164125044 39 25.485837780592963 27.512387420322604 24.16612919860048 22.835645600483954 40 25.34522382017422 25.560339320650627 25.16612765931246 23.928309199862696 41 24.53686671766841 25.620987268548806 24.803240509134906 25.03890550464788 42 26.582195671214237 23.921998118990043 26.659698822906453 22.836107386889267 43 23.275420187146636 23.389635358061483 27.945850926112637 25.389093528679247 44 23.698801356420603 24.61198397293316 25.660316077401557 26.02889859324468 45 23.24078620674793 23.297201112597378 27.056142451870315 26.40587022878438 46 24.561726219154593 24.609598076505694 25.880126406332018 24.9485492980077 47 23.155278757363572 25.130108319697808 25.941620962639938 25.772991960298686 48 23.229318511015915 25.20868897300243 25.229623290043424 26.332369225938233 49 24.048450629645764 23.919843115765236 28.199525591432938 23.832180663156063 50 24.00065573669555 22.159975125105632 29.45712390191041 24.38224523628841 51 22.44351197796971 23.70295743406845 27.469518249029097 26.38401233893275 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 609.0 1 1295.0 2 1981.0 3 4006.0 4 6031.0 5 4255.5 6 2480.0 7 2490.0 8 2500.0 9 2561.0 10 2622.0 11 2804.0 12 2986.0 13 2989.5 14 2993.0 15 2997.0 16 3001.0 17 3020.0 18 3039.0 19 3751.0 20 4463.0 21 4330.0 22 4197.0 23 4792.5 24 5388.0 25 7028.5 26 10945.5 27 13222.0 28 13934.0 29 14646.0 30 17386.0 31 20126.0 32 21955.5 33 23785.0 34 26233.0 35 28681.0 36 34346.5 37 40012.0 38 45835.0 39 51658.0 40 61339.0 41 71020.0 42 76937.0 43 82854.0 44 84243.5 45 85633.0 46 97991.5 47 110350.0 48 113573.5 49 116797.0 50 108956.0 51 101115.0 52 92142.0 53 83169.0 54 81187.0 55 79205.0 56 79976.0 57 80747.0 58 77339.0 59 73931.0 60 65749.5 61 57568.0 62 48583.5 63 39599.0 64 33381.5 65 27164.0 66 22246.5 67 17329.0 68 14567.5 69 11806.0 70 9546.5 71 7287.0 72 6025.5 73 4764.0 74 3912.0 75 2390.5 76 1721.0 77 1165.0 78 609.0 79 376.0 80 143.0 81 179.5 82 216.0 83 139.5 84 63.0 85 45.0 86 27.0 87 15.5 88 4.0 89 8.5 90 13.0 91 12.5 92 12.0 93 7.5 94 3.0 95 3.5 96 4.0 97 2.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1299302.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 16.801860851920587 #Duplication Level Percentage of deduplicated Percentage of total 1 73.2819544799026 12.312732021281017 2 10.95452542447228 3.681128237616191 3 4.305185818794567 2.1700539920714434 4 2.1734396200870623 1.4607132026701586 5 1.2131361320638379 1.0191472242686879 6 0.8012674134087088 0.8077670151162872 7 0.5515756456839604 0.6487248073663108 8 0.39758800033969616 0.5344174606480744 9 0.3058261110168297 0.4624602985969911 >10 2.837074591693245 11.20869743483854 >50 1.4474956971915547 17.85902353360973 >100 1.7180685202740926 45.243224954543706 >500 0.006890649145484329 0.7966913771157081 >1k 0.005971895926086418 1.7952184402571454 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source ACTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCGTCTTCTGC 3915 0.3013156294687455 Illumina Single End Adapter 2 (95% over 22bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3160 0.24320750679980482 No Hit ATCTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCGTCTTCTG 2013 0.15492933898354655 Illumina Single End Adapter 2 (95% over 21bp) ATGCTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCGTCTTCT 1799 0.13845895719393952 No Hit CTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCGTCTTCTGCT 1723 0.13260966272660243 Illumina Single End Adapter 2 (95% over 23bp) ATGCCTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCGTCTTC 1686 0.1297619798938199 No Hit GCCCTGCTAGAGGACTTGCGTCTGTATCTATGCTCTGCCCCATGCAGCTCC 1476 0.11359945570775694 No Hit ATGTCTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCGTCTTC 1418 0.10913552045636811 No Hit ATTGCTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCGTCTTC 1378 0.10605694442092754 TruSeq Adapter, Index 22 (95% over 21bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.146617183687857 0.0 2 0.0 0.0 0.0 0.5995526829020504 0.0 3 0.0 0.0 0.0 0.8346019632079378 0.0 4 0.0 0.0 0.0 1.1306840134164344 0.0 5 0.0 0.0 0.0 2.1916382796301397 0.0 6 0.0 0.0 0.0 2.448468485386769 0.0 7 0.0 0.0 0.0 2.869463758233267 0.0 8 0.0 0.0 0.0 4.174703032859181 0.0 9 0.0 0.0 0.0 4.334712022301205 0.0 10 0.0 0.0 0.0 4.653883392775506 0.0 11 0.0 0.0 0.0 4.907865915699352 0.0 12 0.0 0.0 0.0 5.628329672393331 0.0 13 0.0 0.0 0.0 6.225958245273231 0.0 14 0.0 0.0 0.0 6.475938619351005 0.0 15 0.0 0.0 0.0 6.619400262602536 0.0 16 0.0 0.0 0.0 6.735924365543961 0.0 17 0.0 0.0 0.0 6.865609381036895 0.0 18 7.696440088601418E-5 0.0 0.0 7.160690894033873 0.0 19 1.5392880177202836E-4 0.0 0.0 7.525579118634467 0.0 20 1.5392880177202836E-4 0.0 0.0 7.955887083988172 0.0 21 2.3089320265804256E-4 0.0 0.0 8.218412655410367 0.0 22 3.078576035440567E-4 0.0 0.0 8.550744938436175 0.0 23 3.078576035440567E-4 0.0 0.0 8.97912879376773 0.0 24 3.848220044300709E-4 0.0 0.0 9.365105264211092 0.0 25 3.848220044300709E-4 0.0 0.0 9.767398187642288 0.0 26 3.848220044300709E-4 0.0 0.0 10.061479163427748 0.0 27 4.617864053160851E-4 0.0 0.0 10.338551006617399 0.0 28 4.617864053160851E-4 0.0 0.0 10.583990481042898 0.0 29 4.617864053160851E-4 0.0 0.0 10.822580123789542 0.0 30 4.617864053160851E-4 0.0 0.0 11.084874802009079 0.0 31 5.387508062020993E-4 0.0 0.0 11.359175926766833 0.0 32 5.387508062020993E-4 0.0 0.0 11.66433977627988 0.0 33 5.387508062020993E-4 0.0 0.0 11.956650570844962 0.0 34 5.387508062020993E-4 0.0 0.0 12.265200853996992 0.0 35 6.157152070881134E-4 0.0 0.0 12.565669875055992 0.0 36 6.157152070881134E-4 0.0 0.0 12.836122779769445 0.0 37 6.157152070881134E-4 0.0 0.0 13.17107185242538 0.0 38 6.157152070881134E-4 0.0 0.0 13.48423999963057 0.0 39 6.157152070881134E-4 0.0 0.0 13.804642800519048 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGACAA 25 3.891087E-5 45.0 29 CCTTACG 25 3.891087E-5 45.0 6 TCGTTAC 20 7.0336263E-4 45.0 2 GTCGCAT 20 7.0336263E-4 45.0 42 AAATCGG 20 7.0336263E-4 45.0 19 CCGATAG 20 7.0336263E-4 45.0 37 CGTTGTA 35 1.2120836E-7 45.0 34 TAGCGAT 25 3.891087E-5 45.0 2 CACGCAT 25 3.891087E-5 45.0 25 TCGATTA 35 1.2120836E-7 45.0 2 CGACACT 20 7.0336263E-4 45.0 27 GCGCAAC 25 3.891087E-5 45.0 32 CGTTATC 25 3.891087E-5 45.0 44 CGTTACA 20 7.0336263E-4 45.0 34 TGCATCG 25 3.891087E-5 45.0 18 GTTACGC 20 7.0336263E-4 45.0 22 AAACGAC 20 7.0336263E-4 45.0 33 CTAACGC 25 3.891087E-5 45.0 23 CCCGTAA 20 7.0336263E-4 45.0 38 CTAACCG 35 1.2120836E-7 45.0 43 >>END_MODULE