SRR1545586_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545586_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1477682
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ACTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGC	6529	0.4418406666657644	TruSeq Adapter, Index 21 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3649	0.24694081676571822	No Hit
GCCCTGCTAGAGGACTTGCGTCTGTATCTATGCTCTGCCCCATGCAGCTCC	3366	0.22778919957067895	No Hit
ATCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTG	3153	0.2133747315051547	No Hit
ATGCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCT	2609	0.17656031541292375	No Hit
ATTGCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTC	2142	0.14495676336315932	No Hit
CTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGCT	2081	0.14082867626458195	TruSeq Adapter, Index 21 (95% over 22bp)
ATGTCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTC	2070	0.14008426711565816	No Hit
CCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGC	2021	0.13676826272499767	TruSeq Adapter, Index 15 (95% over 22bp)
ATATCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTC	1980	0.13399364680628173	No Hit
ATGCCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTC	1950	0.13196344003648958	No Hit
ATAGCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTC	1657	0.1121350872515196	No Hit
ATGGCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTC	1625	0.10996953336374132	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1582	0.10705957032703924	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACAACGT	35	1.2122473E-7	45.000004	33
AGCGTTC	65	0.0	45.000004	7
GTACCTA	20	7.0339406E-4	45.000004	35
CGACGTG	20	7.0339406E-4	45.000004	2
CGACGTC	20	7.0339406E-4	45.000004	41
CGAAACG	20	7.0339406E-4	45.000004	42
CGACGGT	35	1.2122473E-7	45.000004	30
CCGATCA	20	7.0339406E-4	45.000004	18
CGTGCAT	20	7.0339406E-4	45.000004	21
ACCGAAT	80	0.0	45.000004	2
AGGCGTA	20	7.0339406E-4	45.000004	14
TACGGGT	20	7.0339406E-4	45.000004	6
GCGCATT	20	7.0339406E-4	45.000004	31
ACGGGTA	20	7.0339406E-4	45.000004	7
AACGGTA	35	1.2122473E-7	45.000004	21
CTAACCG	35	1.2122473E-7	45.000004	19
CCGTAGA	35	1.2122473E-7	45.000004	25
CGCTCAT	40	6.8175723E-9	45.000004	27
TATTACG	35	1.2122473E-7	45.000004	15
GTATCGC	20	7.0339406E-4	45.000004	11