##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545585_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1207203 Sequences flagged as poor quality 0 Sequence length 52 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.55791279511399 33.0 31.0 34.0 31.0 34.0 2 32.97554760881144 34.0 31.0 34.0 31.0 34.0 3 33.05072800514909 34.0 33.0 34.0 31.0 34.0 4 36.42650987447844 37.0 37.0 37.0 35.0 37.0 5 36.40049685098529 37.0 37.0 37.0 35.0 37.0 6 36.411007096569506 37.0 37.0 37.0 35.0 37.0 7 36.48060102567671 37.0 37.0 37.0 35.0 37.0 8 36.5329675290734 37.0 37.0 37.0 35.0 37.0 9 38.34590122787965 39.0 39.0 39.0 37.0 39.0 10 38.1189816460032 39.0 39.0 39.0 37.0 39.0 11 37.92861681092575 39.0 38.0 39.0 35.0 39.0 12 37.54097943759252 39.0 37.0 39.0 35.0 39.0 13 37.4875584305208 39.0 37.0 39.0 35.0 39.0 14 38.83801150262218 41.0 38.0 41.0 35.0 41.0 15 38.86047831226397 41.0 38.0 41.0 35.0 41.0 16 38.90349758905503 41.0 38.0 41.0 35.0 41.0 17 38.85589167687622 41.0 38.0 41.0 35.0 41.0 18 38.8600715869659 41.0 38.0 41.0 35.0 41.0 19 38.81990104398349 41.0 38.0 41.0 35.0 41.0 20 38.72944152723279 40.0 38.0 41.0 35.0 41.0 21 38.6803304829428 40.0 38.0 41.0 35.0 41.0 22 38.78644436768298 41.0 38.0 41.0 35.0 41.0 23 38.79316568961475 41.0 38.0 41.0 35.0 41.0 24 38.760464478633665 41.0 38.0 41.0 35.0 41.0 25 38.69762169245769 40.0 37.0 41.0 35.0 41.0 26 38.57802705924356 40.0 37.0 41.0 35.0 41.0 27 38.49522739754623 40.0 37.0 41.0 35.0 41.0 28 38.443840016964835 40.0 37.0 41.0 35.0 41.0 29 38.4362721099931 40.0 36.0 41.0 35.0 41.0 30 38.348211526975994 40.0 36.0 41.0 35.0 41.0 31 38.24943857826728 40.0 36.0 41.0 35.0 41.0 32 38.23135628390585 40.0 36.0 41.0 35.0 41.0 33 38.032483352012875 40.0 35.0 41.0 34.0 41.0 34 37.94554602664175 40.0 35.0 41.0 34.0 41.0 35 37.865629061557996 40.0 35.0 41.0 34.0 41.0 36 37.72842098636269 40.0 35.0 41.0 34.0 41.0 37 37.70887000777831 40.0 35.0 41.0 34.0 41.0 38 37.63427940454091 40.0 35.0 41.0 33.0 41.0 39 37.59249107233829 40.0 35.0 41.0 33.0 41.0 40 37.4431475070887 40.0 35.0 41.0 33.0 41.0 41 37.30795069263413 39.0 35.0 41.0 33.0 41.0 42 37.23505657292104 39.0 35.0 41.0 33.0 41.0 43 37.14750046181131 39.0 35.0 41.0 33.0 41.0 44 37.02583658257973 39.0 35.0 41.0 33.0 41.0 45 36.960994132718355 39.0 35.0 41.0 33.0 41.0 46 36.9428977562183 39.0 35.0 41.0 33.0 41.0 47 36.90950072191669 39.0 35.0 41.0 33.0 41.0 48 36.79465176942072 38.0 35.0 41.0 33.0 41.0 49 36.722933922463746 38.0 35.0 40.0 33.0 41.0 50 36.60560651356897 38.0 35.0 40.0 32.0 41.0 51 36.485886797829366 38.0 35.0 40.0 32.0 41.0 52 36.16421761708677 37.0 35.0 40.0 31.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 2.0 11 6.0 12 4.0 13 6.0 14 12.0 15 21.0 16 34.0 17 77.0 18 163.0 19 290.0 20 539.0 21 923.0 22 1373.0 23 2004.0 24 2639.0 25 3467.0 26 4563.0 27 5663.0 28 7209.0 29 9183.0 30 11551.0 31 15007.0 32 19402.0 33 27117.0 34 61718.0 35 139131.0 36 69700.0 37 104629.0 38 180474.0 39 539530.0 40 765.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.449569790664867 13.98016737864303 47.242841510499886 12.327421320192213 2 25.10779048759819 12.509412252951657 50.39434129968199 11.988455959768158 3 24.815710365199557 13.932950796179266 45.922682432035046 15.328656406586132 4 21.89060166351475 14.754353658829542 48.18394255150128 15.171102126154427 5 21.92970030723913 16.622390766093194 46.12513388386212 15.322775042805558 6 24.62220521320772 18.528366811547023 44.5910091343378 12.258418840907453 7 86.0012773328098 2.6543174594496532 6.584311006516717 4.76009420122382 8 87.74597147290059 2.496514670689188 6.525828713149322 3.2316851432609095 9 79.8215378855089 4.406715357731881 8.752546174918386 7.019200581840835 10 44.851197354546 20.997462729963395 13.597713060686562 20.553626854804037 11 32.42163911123481 20.90642584552888 25.17289966973243 21.499035373503876 12 27.606707405465357 21.87171503052925 28.993632388256156 21.527945175749235 13 21.808759587244232 26.348012720312987 32.899189282995486 18.94403840944729 14 17.58080455399796 32.45932954109624 30.760443769606272 19.199422135299532 15 16.59132722499861 22.481554469298036 39.26398459911051 21.663133706592845 16 20.3331999671969 21.25085838918558 35.03023103819324 23.385710605424272 17 19.990921162389423 21.090156336589622 28.168501900674535 30.750420600346423 18 21.624117898978053 22.193781824597853 30.730125753497962 25.451974522926136 19 25.920578394851567 25.034646202834153 26.82224944769024 22.222525954624036 20 27.214229918249046 20.685170596825884 26.187062159388276 25.9135373255368 21 24.807509590350588 25.331116639040825 28.091547154869563 21.769826615739028 22 27.625594038450867 21.116332547218654 24.204545548677398 27.05352786565308 23 25.94890834432983 25.35331671640975 22.20587589659734 26.491899042663082 24 26.156661307170374 19.387708612387478 30.239073295874846 24.2165567845673 25 28.271715693218123 22.704963456850255 24.898877819223443 24.12444303070817 26 23.269988560333267 26.408648752529608 24.39109246746405 25.93027021967308 27 22.907911925334844 24.144820713666217 24.969702692919086 27.97756466807985 28 22.120057687066716 25.338903233341863 29.36266725645977 23.178371823131652 29 21.916280857486274 23.21490254745888 28.293998606696636 26.574817988358213 30 23.83285992496705 28.626005733915505 25.72823294839393 21.81290139272351 31 24.412215675408362 30.529248187753012 23.012533931741388 22.04600220509724 32 29.73692079956726 24.327225826973592 23.802127728310815 22.13372564514833 33 25.18515941395109 27.263765911781203 24.369223734533463 23.181850939734243 34 24.879162825142085 25.827139263239076 24.407825361600327 24.885872550018515 35 24.80378196541924 24.48834206011748 27.37261255977661 23.335263414686676 36 25.897218611948446 24.98950052311003 26.90665944335791 22.206621421583613 37 27.53637954842723 26.996453786148646 25.005902072807974 20.461264592616153 38 22.09065086816385 26.138603035280727 29.402511425170413 22.36823467138501 39 24.100172050599607 28.460913367511516 23.242238463622108 24.196676118266772 40 26.819018839416405 22.347939824536553 27.657651612860473 23.175389723186573 41 23.604729279168456 22.750191972683965 27.19393507140058 26.45114367674699 42 23.575985149142273 24.966720592974006 24.247206145113953 27.210088112769764 43 21.7338757441789 22.818780271420795 28.509372491619057 26.937971492781248 44 25.330950966821653 22.915284339087957 26.466054176472394 25.287710517618002 45 21.80942227612092 25.999024190629083 25.750267353543688 26.441286179706314 46 22.12295695090221 25.826973591019904 25.2429790184418 26.807090439636085 47 24.02487402698635 23.3437126978644 29.20130251498712 23.430110760162126 48 22.57449658425302 22.649960280085455 31.229461822079635 23.54608131358189 49 22.015932697317684 22.83915795437884 27.609026816533756 27.53588253176972 50 20.865421971284036 23.767170890065714 30.879562095190288 24.487845043459966 51 23.382397161040853 23.40890471610823 28.084423249445205 25.124274873405717 52 22.905841022595204 21.525791436900008 28.397460907568984 27.170906632935804 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 166.0 1 130.5 2 95.0 3 89.5 4 84.0 5 106.0 6 128.0 7 199.0 8 270.0 9 290.5 10 311.0 11 358.0 12 405.0 13 483.5 14 655.0 15 748.0 16 685.0 17 622.0 18 741.0 19 860.0 20 1020.0 21 1180.0 22 1677.5 23 2175.0 24 3374.5 25 4574.0 26 5116.5 27 5659.0 28 6826.5 29 7994.0 30 10177.0 31 12360.0 32 15476.0 33 18592.0 34 21589.0 35 24586.0 36 29177.5 37 33769.0 38 35519.5 39 42634.5 40 47999.0 41 60845.0 42 73691.0 43 83379.5 44 93068.0 45 107549.0 46 122030.0 47 123335.5 48 124641.0 49 112474.0 50 100307.0 51 86623.5 52 72940.0 53 69437.5 54 65935.0 55 63784.5 56 61634.0 57 60552.5 58 59471.0 59 60794.5 60 62118.0 61 54719.0 62 47320.0 63 43564.0 64 33744.0 65 27680.0 66 24355.0 67 21030.0 68 17574.0 69 14118.0 70 10664.0 71 7210.0 72 6845.5 73 6481.0 74 4797.0 75 3113.0 76 2508.5 77 1904.0 78 1488.0 79 1072.0 80 924.5 81 777.0 82 467.5 83 158.0 84 152.0 85 146.0 86 130.0 87 114.0 88 63.0 89 10.0 90 8.0 91 7.5 92 7.0 93 3.5 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 1207203.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 16.702751965208094 #Duplication Level Percentage of deduplicated Percentage of total 1 67.62799723601702 11.295736637369709 2 12.68792053149308 4.238463791836003 3 5.6142728047969905 2.8132141837061186 4 2.972901424778425 1.9862254046035113 5 1.8365134748011431 1.5337414525182969 6 1.157585071453412 1.160091379626842 7 0.8441983963017765 0.9870305495998514 8 0.59593249943836 0.7962970180900352 9 0.45325717151540984 0.6813577901046307 >10 3.3181698611431547 11.80898299531632 >50 1.1923249394950126 14.69681909546445 >100 1.6850334975030312 44.12485083470442 >500 0.007442727462469219 0.8338156422522842 >1k 0.005954181969975375 2.585566087564533 >5k 4.961818308312813E-4 0.45780713724297967 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGCTT 5524 0.4575866693505566 TruSeq Adapter, Index 21 (95% over 23bp) GTCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGC 4012 0.3323384716572109 TruSeq Adapter, Index 15 (95% over 22bp) TGCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGC 3827 0.3170137913838849 TruSeq Adapter, Index 21 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGCT 3789 0.31386601921963414 TruSeq Adapter, Index 15 (95% over 23bp) TTCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGC 3578 0.2963876000970839 TruSeq Adapter, Index 21 (95% over 21bp) GCCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGC 2934 0.24304114552399225 TruSeq Adapter, Index 15 (95% over 22bp) ATCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGC 2891 0.23947919281181376 TruSeq Adapter, Index 21 (95% over 21bp) GGCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGC 2711 0.22456869308641547 TruSeq Adapter, Index 15 (95% over 22bp) AGCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGC 2059 0.1705595496366394 TruSeq Adapter, Index 21 (95% over 21bp) ACCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGC 1709 0.1415669112816983 TruSeq Adapter, Index 21 (95% over 21bp) CCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGCT 1298 0.10752127024203882 TruSeq Adapter, Index 15 (95% over 23bp) TCCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGC 1218 0.10089438147519514 TruSeq Adapter, Index 21 (95% over 21bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.48003525504823963 0.0 2 0.0 0.0 0.0 1.020706542313099 0.0 3 0.0 0.0 0.0 3.5472907207818403 0.0 4 0.0 0.0 0.0 4.057726828047976 0.0 5 0.0 0.0 0.0 4.948463514421353 0.0 6 0.0 0.0 0.0 7.639560206526989 0.0 7 0.0 0.0 0.0 7.961378492266835 0.0 8 0.0 0.0 0.0 8.627794993882553 0.0 9 0.0 0.0 0.0 9.054815138796043 0.0 10 0.0 0.0 0.0 10.374311528384208 0.0 11 0.0 0.0 0.0 11.526230468280811 0.0 12 0.0 0.0 0.0 12.027968784040464 0.0 13 0.0 0.0 0.0 12.25104642715434 0.0 14 0.0 0.0 0.0 12.380436430326963 0.0 15 0.0 0.0 0.0 12.559859443689255 0.0 16 0.0 0.0 0.0 13.043456651449674 0.0 17 0.0 0.0 0.0 13.745492680187176 0.0 18 0.0 0.0 0.0 14.52324091308587 0.0 19 2.4850832875663827E-4 0.0 0.0 14.980330565778912 0.0 20 2.4850832875663827E-4 0.0 0.0 15.551071360823325 0.0 21 4.1418054792773047E-4 0.0 0.0 16.2945254443536 0.0 22 4.1418054792773047E-4 0.0 0.0 16.933688865915673 0.0 23 4.970166575132765E-4 0.0 0.0 17.666871271857342 0.0 24 5.798527670988227E-4 0.0 0.0 18.192383551068048 0.0 25 5.798527670988227E-4 0.0 0.0 18.65212395926783 0.0 26 5.798527670988227E-4 0.0 0.0 19.050565646374306 0.0 27 5.798527670988227E-4 0.0 0.0 19.44768195572741 0.0 28 5.798527670988227E-4 0.0 0.0 19.90212085291372 0.0 29 5.798527670988227E-4 0.0 0.0 20.34289179201841 0.0 30 5.798527670988227E-4 0.0 0.0 20.811909844491773 0.0 31 5.798527670988227E-4 0.0 0.0 21.231971756200075 0.0 32 5.798527670988227E-4 0.0 0.0 21.63770302095008 0.0 33 5.798527670988227E-4 0.0 0.0 22.095372526410223 0.0 34 6.626888766843687E-4 0.0 0.0 22.501517971708154 0.0 35 6.626888766843687E-4 0.0 0.0 23.011871242864704 0.0 36 6.626888766843687E-4 0.0 0.0 23.424974921367824 0.0 37 6.626888766843687E-4 0.0 0.0 23.836918894336744 0.0 38 6.626888766843687E-4 0.0 0.0 24.256069608839606 0.0 39 6.626888766843687E-4 0.0 0.0 24.674226290027445 0.0 40 6.626888766843687E-4 0.0 0.0 25.097850154447926 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTAACG 20 6.311582E-4 46.0 24 AACCGTC 20 6.311582E-4 46.0 14 AGCGTAC 30 1.8614828E-6 46.0 40 GGTACGC 20 6.311582E-4 46.0 34 GTCGCAA 30 1.8614828E-6 46.0 27 ACACGTC 20 6.311582E-4 46.0 38 TACCCCC 25 3.4172594E-5 46.0 37 CGTATTG 20 6.311582E-4 46.0 1 CGTATAG 65 0.0 46.0 1 GGTCGAC 20 6.311582E-4 46.0 13 CCGATTT 20 6.311582E-4 46.0 11 CCGATTG 60 0.0 46.0 44 CACGGGT 20 6.311582E-4 46.0 32 CAACGGC 30 1.8614828E-6 46.0 24 CACGGCA 25 3.4172594E-5 46.0 36 CGACGGT 30 1.8614828E-6 46.0 28 CCCTATG 25 3.4172594E-5 46.0 11 TCCGATA 45 3.092282E-10 46.0 20 CTATCGT 20 6.311582E-4 46.0 21 GCGAAAC 20 6.311582E-4 46.0 24 >>END_MODULE