SRR1545580_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545580_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1276608
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ACTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGC	4348	0.34059006366872213	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3089	0.24196934376096657	No Hit
ATCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTG	2511	0.19669311174612725	No Hit
ATGCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCT	1967	0.1540801874968667	No Hit
ATGCCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTC	1603	0.12556712788890562	No Hit
CTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGCT	1586	0.1242354740061162	No Hit
CCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGC	1490	0.11671554619742316	No Hit
ATTGCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTC	1461	0.11444390133854715	No Hit
ATGGGGGGCATCATCTGTCCTTATAGCTCATTAGGAAGAGAAACAGTGTTG	1434	0.11232892164235223	No Hit
ATATCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTC	1408	0.11029227452749787	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGACA	20	7.03358E-4	45.000004	24
TTCGTAA	90	0.0	45.000004	2
CGATTAG	20	7.03358E-4	45.000004	44
CGTTCAC	20	7.03358E-4	45.000004	42
CCCACGT	20	7.03358E-4	45.000004	34
ATCGTAG	80	0.0	45.000004	1
CGTTAGC	20	7.03358E-4	45.000004	43
TACGCTA	20	7.03358E-4	45.000004	41
TCTACGA	20	7.03358E-4	45.000004	27
GAACGCT	20	7.03358E-4	45.000004	24
TTACGTA	45	3.8562575E-10	45.000004	2
CCGAATC	20	7.03358E-4	45.000004	40
ACCCGGT	20	7.03358E-4	45.000004	22
ACCCGAT	20	7.03358E-4	45.000004	34
CACGTTA	20	7.03358E-4	45.000004	41
TATACGG	75	0.0	45.000004	4
CGATCAA	20	7.03358E-4	45.000004	44
CGATAGA	45	3.8562575E-10	45.000004	13
ATCGCGA	125	0.0	45.000004	1
AGTACGA	45	3.8562575E-10	45.000004	28