##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545578_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1130040 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.843974549573467 31.0 31.0 34.0 31.0 34.0 2 32.531737814590635 34.0 31.0 34.0 31.0 34.0 3 32.470072740787934 34.0 31.0 34.0 31.0 34.0 4 35.939032246646136 37.0 35.0 37.0 35.0 37.0 5 35.700503521999224 37.0 35.0 37.0 35.0 37.0 6 35.68568723231036 37.0 35.0 37.0 33.0 37.0 7 35.67342837421684 37.0 35.0 37.0 33.0 37.0 8 35.632040458744825 37.0 35.0 37.0 33.0 37.0 9 37.856901525609715 39.0 38.0 39.0 35.0 39.0 10 37.81232788219886 39.0 38.0 39.0 35.0 39.0 11 37.60858111217302 39.0 37.0 39.0 35.0 39.0 12 37.13993221478886 39.0 37.0 39.0 33.0 39.0 13 36.8521919578068 39.0 35.0 39.0 33.0 39.0 14 37.14699037202223 39.0 35.0 41.0 32.0 41.0 15 36.81846129340554 39.0 35.0 41.0 31.0 41.0 16 36.883367845386005 39.0 35.0 41.0 31.0 41.0 17 37.09764521609854 39.0 35.0 41.0 32.0 41.0 18 37.21015185303175 39.0 35.0 41.0 32.0 41.0 19 37.18762344695763 39.0 35.0 41.0 32.0 41.0 20 37.155752893702875 39.0 35.0 41.0 32.0 41.0 21 37.13703143251566 39.0 35.0 41.0 32.0 41.0 22 37.02250893773672 38.0 35.0 41.0 32.0 41.0 23 36.92646454992744 38.0 35.0 41.0 32.0 41.0 24 36.84386127924675 38.0 35.0 41.0 32.0 41.0 25 36.82940692364872 38.0 35.0 41.0 32.0 41.0 26 36.72748663764114 38.0 35.0 41.0 31.0 41.0 27 36.619718771016956 38.0 35.0 41.0 31.0 41.0 28 36.55326094651517 38.0 35.0 41.0 31.0 41.0 29 36.494196665604754 38.0 35.0 41.0 31.0 41.0 30 36.35774397366465 38.0 35.0 41.0 31.0 41.0 31 36.36993203780397 38.0 35.0 41.0 31.0 41.0 32 36.25316625960143 38.0 35.0 40.0 30.0 41.0 33 36.10108403242363 38.0 35.0 40.0 30.0 41.0 34 36.03555714841953 38.0 35.0 40.0 30.0 41.0 35 35.906250221231105 38.0 35.0 40.0 30.0 41.0 36 35.83713054405154 38.0 35.0 40.0 30.0 41.0 37 35.7532556369686 37.0 35.0 40.0 30.0 41.0 38 35.64742929453825 37.0 35.0 40.0 29.0 41.0 39 35.56777459204984 37.0 34.0 40.0 29.0 41.0 40 35.47885207603271 37.0 34.0 40.0 29.0 41.0 41 35.42451152171605 37.0 34.0 40.0 29.0 41.0 42 35.3089899472585 37.0 34.0 40.0 28.0 41.0 43 35.26117748044317 37.0 34.0 40.0 29.0 41.0 44 35.19801511450922 36.0 34.0 40.0 28.0 41.0 45 35.1913808360766 36.0 34.0 40.0 28.0 41.0 46 35.119343563059715 36.0 34.0 40.0 28.0 41.0 47 34.99287901313228 36.0 34.0 40.0 28.0 41.0 48 34.96777547697427 36.0 34.0 40.0 27.0 41.0 49 34.93894021450568 36.0 34.0 40.0 28.0 41.0 50 34.81715602987505 35.0 34.0 40.0 27.0 41.0 51 34.71602332660791 36.0 34.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 7.0 11 6.0 12 10.0 13 10.0 14 16.0 15 37.0 16 67.0 17 182.0 18 334.0 19 664.0 20 1199.0 21 1918.0 22 2929.0 23 4679.0 24 6526.0 25 9378.0 26 12605.0 27 15242.0 28 17737.0 29 20500.0 30 24934.0 31 30974.0 32 38422.0 33 49848.0 34 83743.0 35 185904.0 36 78677.0 37 103816.0 38 150501.0 39 289054.0 40 119.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 1.9744433825351313 90.99014194187816 3.2793529432586457 3.7560617323280594 2 3.7041166684365154 2.5881384729744084 90.5460868641818 3.161657994407278 3 27.991664011893384 16.32499734522672 42.88927825563697 12.794060387242927 4 25.770946161197834 15.450780503345014 44.81195355916604 13.966319776291106 5 24.397100987575662 13.392534777529999 47.008247495663866 15.20211673923047 6 22.347085058935967 14.600014158790838 48.11157127181339 14.941329510459806 7 22.327528229089236 16.590740150791124 45.370694842660434 15.711036777459206 8 24.1544547095678 18.34280202470709 45.239991504725495 12.26275176099961 9 79.9531874977877 3.874199143393154 11.0258928887473 5.146720470071856 10 82.21293051573396 4.063661463311033 10.067254256486496 3.6561537644685145 11 75.02362748221302 7.382570528476869 10.969434710275742 6.624367279034371 12 47.71547909808503 18.88711904003398 16.78940568475452 16.607996177126473 13 39.27772468231213 21.700205302467168 23.03980390074688 15.982266114473823 14 33.23784998761106 23.532529821953204 24.7869101978691 18.442709992566638 15 19.71195709886376 34.323652260096985 30.7112137623447 15.25317687869456 16 15.192648047856713 38.306431630738736 29.931418356872324 16.56950196453223 17 13.846943471027572 24.68638278291034 42.98794732929807 18.478726416764008 18 17.028246787724328 20.403614031361723 42.163817210010265 20.404321970903684 19 17.253106084740363 19.65178223779689 30.052210541219782 33.04290113624296 20 20.74838058829776 21.371278892782556 35.56405083005912 22.31628968886057 21 25.258486425259285 22.402923790308307 29.498247849633643 22.84034193479877 22 26.292078156525434 21.842501150401755 27.759371349686734 24.106049343386076 23 23.552352129128174 26.181462603093696 29.44258610314679 20.82359916463134 24 26.78445010796078 21.699939825138934 25.082828926409682 26.4327811404906 25 24.23073519521433 25.161852677781315 23.636065979965313 26.971346147039043 26 22.399472585041238 21.037396906304203 33.734558068740924 22.82857243991363 27 23.67332129836112 23.787653534388163 30.698559343032105 21.84046582421861 28 20.092474602668933 29.36126154826378 26.319068351562773 24.227195497504514 29 20.740062298679693 28.88313688011044 25.43166613571201 24.94513468549786 30 19.33834200559272 28.659958939506563 31.873031043148913 20.128668011751795 31 19.88159711160667 23.46890375561927 30.862358854553822 25.78714027822024 32 21.860022654065343 27.521769140915364 27.495132915649002 23.123075289370288 33 24.807174967257797 29.14171179781247 22.766185267778134 23.284927967151607 34 28.035379278609607 24.979912215496796 24.717709107642207 22.26699939825139 35 26.344996637287178 26.050316802945026 24.880358217408233 22.724328342359563 36 21.277742380800678 27.19346217832997 24.70939081802414 26.819404622845212 37 21.25641570209904 23.345014335775723 28.832961665073803 26.56560829705143 38 28.21917808219178 24.61019078970656 25.483434214718066 21.6871969133836 39 24.81593571908959 26.099341616225974 25.996955859969557 23.087766804714878 40 22.22682382924498 28.018211744717004 26.215178223779688 23.539786202258327 41 20.54449400021238 27.931135181055538 26.524901773388553 24.999469045343528 42 24.484354536122616 22.796626668082546 26.47693886942055 26.24207992637429 43 20.657675834483737 22.44203745000177 28.349350465470245 28.550936250044245 44 21.369243566599412 24.214541078191925 26.126951258362535 28.28926409684613 45 21.196063856146687 22.839545502814058 28.00838908357226 27.95600155746699 46 23.56412162401331 25.899171710735903 26.364022512477437 24.172684152773353 47 19.231620119641782 28.895525822094793 26.262167710877492 25.610686347385936 48 22.351332696187747 25.96120491310042 25.77917595837316 25.908286432338677 49 22.693621464726913 24.110827935294328 29.430285653605182 23.76526494637358 50 22.920073625712366 21.9923188559697 31.664454355598032 23.423153162719903 51 21.447205408658103 20.877579554706028 29.414445506353758 28.260769530282115 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 897.0 1 1107.0 2 1317.0 3 3514.0 4 5711.0 5 3995.5 6 2280.0 7 2404.0 8 2528.0 9 2658.0 10 2788.0 11 2835.0 12 2882.0 13 2898.0 14 2914.0 15 2988.5 16 3063.0 17 3417.5 18 3772.0 19 3091.5 20 2411.0 21 2399.5 22 2388.0 23 3640.5 24 4893.0 25 6616.5 26 8510.0 27 8680.0 28 10569.0 29 12458.0 30 12562.5 31 12667.0 32 15067.0 33 17467.0 34 21843.5 35 26220.0 36 30005.0 37 33790.0 38 43436.0 39 53082.0 40 67982.0 41 82882.0 42 88214.5 43 93547.0 44 97389.5 45 101232.0 46 108220.0 47 115208.0 48 122290.0 49 129372.0 50 118507.5 51 107643.0 52 89495.5 53 71348.0 54 61675.5 55 52003.0 56 50479.0 57 48955.0 58 43082.0 59 37209.0 60 33539.0 61 29869.0 62 23728.5 63 17588.0 64 15041.0 65 12494.0 66 10081.5 67 7669.0 68 7122.0 69 6575.0 70 5177.5 71 3780.0 72 2357.0 73 934.0 74 812.5 75 478.0 76 265.0 77 220.5 78 176.0 79 97.0 80 18.0 81 21.0 82 24.0 83 15.0 84 6.0 85 3.0 86 0.0 87 0.5 88 1.0 89 0.5 90 0.0 91 1.0 92 2.0 93 1.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1130040.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 15.525513531243607 #Duplication Level Percentage of deduplicated Percentage of total 1 70.17095390781817 10.894400943961026 2 11.452742195979202 3.5561940786703947 3 5.372718053148367 2.5024262050113535 4 3.013381541471569 1.8713718358766622 5 1.9246975969440798 1.4940959292453684 6 1.3252674336861443 1.2345274484526434 7 0.8598140038484127 0.934433776577089 8 0.6490615027727442 0.8061610515126041 9 0.4784905139980311 0.6685929854683327 >10 2.8102257575980434 8.405492379433433 >50 0.4564878383989104 5.102345779916864 >100 1.4220911857890837 53.53106833851431 >500 0.05205563069461247 4.877118213854139 >1k 0.011440797954859885 3.41606983479351 >5k 5.720398977429942E-4 0.7057011987122824 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source ACTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCTGC 7946 0.7031609500548653 TruSeq Adapter, Index 8 (95% over 23bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3705 0.32786450037166825 No Hit ATGCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCT 3396 0.3005203355633429 TruSeq Adapter, Index 8 (95% over 21bp) ATCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCTG 3172 0.28069802838837565 TruSeq Adapter, Index 8 (95% over 22bp) CTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCTGCT 2456 0.21733743938267672 TruSeq Adapter, Index 8 (95% over 24bp) ATGTCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTC 2438 0.2157445754132597 No Hit ATATCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTC 2341 0.2071608084669569 No Hit ATTGCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTC 2228 0.1971611624367279 No Hit CCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCTGC 2089 0.18486071289511877 TruSeq Adapter, Index 13 (95% over 23bp) ATGCCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTC 1997 0.17671940816254292 No Hit ATGGCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTC 1753 0.15512725213266787 No Hit ATAGCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTC 1739 0.15388835793423242 No Hit ATACCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTC 1550 0.1371632862553538 No Hit ATTTCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTC 1424 0.1260132384694347 No Hit CTACACAAAAATAAATAAAGGTAAAAACTCTCATACGCGCATGTCATCGGG 1401 0.12397791228629075 No Hit ATGTGTGTGTGTGTTTAATGGATATTTTTCAGACAATATATTTTGATTATG 1223 0.10822625747761142 No Hit ATCGCGATGGGAGTGCGTCTTTAGTAAGGATGTGTTAAAATATAGCAGTCT 1210 0.10707585572192135 No Hit ATTTTTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTT 1142 0.10105836961523487 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.24061095182471418 0.0 2 0.0 0.0 0.0 1.2403100775193798 0.0 3 0.0 0.0 0.0 1.6470213443771902 0.0 4 0.0 0.0 0.0 2.2332837775653958 0.0 5 0.0 0.0 0.0 4.2923259353651195 0.0 6 0.0 0.0 0.0 4.758946585961559 0.0 7 0.0 0.0 0.0 5.548210682807688 0.0 8 0.0 0.0 0.0 7.806449329227284 0.0 9 0.0 0.0 0.0 8.103606951966302 0.0 10 0.0 0.0 0.0 8.705886517291423 0.0 11 0.0 0.0 0.0 9.137641145446178 0.0 12 0.0 0.0 0.0 10.29981239602138 0.0 13 8.849244274538954E-5 0.0 0.0 11.250132738664117 0.0 14 8.849244274538954E-5 0.0 0.0 11.681533397047891 0.0 15 8.849244274538954E-5 0.0 0.0 11.930816608261654 0.0 16 1.7698488549077907E-4 0.0 0.0 12.058953665356979 0.0 17 1.7698488549077907E-4 0.0 0.0 12.249123924816821 0.0 18 1.7698488549077907E-4 0.0 0.0 12.662118155109553 0.0 19 1.7698488549077907E-4 0.0 0.0 13.207143109978407 0.0 20 2.654773282361686E-4 0.0 0.0 13.89366748079714 0.0 21 2.654773282361686E-4 0.0 0.0 14.264450815900322 0.0 22 3.5396977098155815E-4 0.0 0.0 14.683993486956213 0.0 23 4.424622137269477E-4 0.0 0.0 15.317422392127712 0.0 24 4.424622137269477E-4 0.0 0.0 15.840412728752964 0.0 25 5.309546564723373E-4 0.0 0.0 16.440037520795723 0.0 26 7.079395419631163E-4 0.0 0.0 16.84418250681392 0.0 27 7.079395419631163E-4 0.0 0.0 17.211957098863756 0.0 28 7.964319847085059E-4 0.0 0.0 17.566988779158258 0.0 29 8.849244274538955E-4 0.0 0.0 17.878039715408303 0.0 30 8.849244274538955E-4 0.0 0.0 18.189179144101093 0.0 31 8.849244274538955E-4 0.0 0.0 18.521379774167286 0.0 32 8.849244274538955E-4 0.0 0.0 18.91340129552936 0.0 33 8.849244274538955E-4 0.0 0.0 19.27790166719762 0.0 34 9.73416870199285E-4 0.0 0.0 19.616385260698735 0.0 35 9.73416870199285E-4 0.0 0.0 19.971682418321475 0.0 36 9.73416870199285E-4 0.0 0.0 20.321758521822236 0.0 37 9.73416870199285E-4 0.0 0.0 20.737849987611057 0.0 38 9.73416870199285E-4 0.0 0.0 21.122526636225267 0.0 39 0.0010619093129446745 0.0 0.0 21.478531733389968 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGGTAGT 35 1.2119017E-7 45.000004 16 GATACTA 35 1.2119017E-7 45.000004 27 AACCGGC 90 0.0 45.000004 19 TTGGCCG 45 3.8562575E-10 45.000004 2 CAAACCG 35 1.2119017E-7 45.000004 33 CGTATTA 35 1.2119017E-7 45.000004 22 ATTAGTC 140 0.0 45.000004 1 AGTTTCG 35 1.2119017E-7 45.000004 12 TACTTGA 45 3.8562575E-10 45.000004 14 TACTTCG 70 0.0 45.000004 30 CGACGTG 35 1.2119017E-7 45.000004 18 ACCATTC 45 3.8562575E-10 45.000004 41 ACGTTCA 35 1.2119017E-7 45.000004 45 CTATCGG 70 0.0 45.000004 31 CTATCCG 45 3.8562575E-10 45.000004 42 GCTATCG 70 0.0 45.000004 30 GCTATCC 45 3.8562575E-10 45.000004 41 GCAGTGC 70 0.0 45.000004 41 CGACCGT 35 1.2119017E-7 45.000004 5 ATTCGAC 140 0.0 45.000004 1 >>END_MODULE