##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545577_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 968652 Sequences flagged as poor quality 0 Sequence length 52 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.52498110776626 33.0 31.0 34.0 31.0 34.0 2 32.90843976990705 34.0 31.0 34.0 31.0 34.0 3 32.97094312508517 34.0 31.0 34.0 31.0 34.0 4 36.35680099767512 37.0 37.0 37.0 35.0 37.0 5 36.332092433608764 37.0 37.0 37.0 35.0 37.0 6 36.33159380252144 37.0 37.0 37.0 35.0 37.0 7 36.44173862233289 37.0 37.0 37.0 35.0 37.0 8 36.49617922638884 37.0 37.0 37.0 35.0 37.0 9 38.27443808509145 39.0 39.0 39.0 37.0 39.0 10 38.04025284622341 39.0 39.0 39.0 35.0 39.0 11 37.85735021452493 39.0 38.0 39.0 35.0 39.0 12 37.23933776010373 39.0 35.0 39.0 35.0 39.0 13 37.055707312843005 39.0 35.0 39.0 34.0 39.0 14 38.27584313045345 40.0 35.0 41.0 34.0 41.0 15 38.365361347522125 40.0 35.0 41.0 35.0 41.0 16 38.450425952767354 40.0 35.0 41.0 35.0 41.0 17 38.41505824589223 40.0 35.0 41.0 35.0 41.0 18 38.43608850237237 40.0 36.0 41.0 35.0 41.0 19 38.42744659588789 40.0 36.0 41.0 35.0 41.0 20 38.31338396039032 40.0 36.0 41.0 35.0 41.0 21 38.25506270569823 40.0 35.0 41.0 35.0 41.0 22 38.33247544009613 40.0 35.0 41.0 35.0 41.0 23 38.335717058345 40.0 35.0 41.0 35.0 41.0 24 38.27922411763977 40.0 35.0 41.0 35.0 41.0 25 38.19905084591783 40.0 35.0 41.0 35.0 41.0 26 38.11951247713317 40.0 35.0 41.0 35.0 41.0 27 38.07188340084984 40.0 35.0 41.0 34.0 41.0 28 37.976766681945634 40.0 35.0 41.0 34.0 41.0 29 37.99298406445246 40.0 35.0 41.0 34.0 41.0 30 37.91467110995487 40.0 35.0 41.0 34.0 41.0 31 37.80446641311843 40.0 35.0 41.0 34.0 41.0 32 37.76858768680599 40.0 35.0 41.0 34.0 41.0 33 37.675331285126134 40.0 35.0 41.0 34.0 41.0 34 37.60185494893935 40.0 35.0 41.0 34.0 41.0 35 37.62670907611815 40.0 35.0 41.0 34.0 41.0 36 37.54622609564632 40.0 35.0 41.0 34.0 41.0 37 37.43594087453492 40.0 35.0 41.0 33.0 41.0 38 37.33110859214661 39.0 35.0 41.0 33.0 41.0 39 37.27262835362958 39.0 35.0 41.0 33.0 41.0 40 37.17390662487663 39.0 35.0 41.0 33.0 41.0 41 37.11121125027358 39.0 35.0 41.0 33.0 41.0 42 37.10263335026408 39.0 35.0 41.0 33.0 41.0 43 37.0242832307165 39.0 35.0 41.0 33.0 41.0 44 36.90024074693491 38.0 35.0 41.0 33.0 41.0 45 36.77419444754153 38.0 35.0 41.0 33.0 41.0 46 36.7939858690221 38.0 35.0 41.0 33.0 41.0 47 36.802233413031715 38.0 35.0 41.0 33.0 41.0 48 36.700409434967355 38.0 35.0 40.0 33.0 41.0 49 36.696179845806334 38.0 35.0 40.0 33.0 41.0 50 36.57525096732366 38.0 35.0 40.0 33.0 41.0 51 36.43389473206064 37.0 35.0 40.0 32.0 41.0 52 36.100106126864965 37.0 35.0 40.0 31.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 0.0 12 1.0 13 8.0 14 17.0 15 32.0 16 33.0 17 52.0 18 109.0 19 230.0 20 407.0 21 630.0 22 984.0 23 1603.0 24 2416.0 25 3299.0 26 4138.0 27 4922.0 28 6160.0 29 8065.0 30 10091.0 31 13153.0 32 17286.0 33 24897.0 34 59950.0 35 155264.0 36 54536.0 37 70780.0 38 123700.0 39 405319.0 40 568.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.95317616646639 14.486626776179682 45.61669206278416 11.943504994569773 2 24.081713556571398 13.44610861279386 50.11882492370842 12.353352906926327 3 25.485107138580215 13.355054240325732 44.68983701060856 16.4700016104855 4 22.84711124325351 14.994239417252016 47.821818362012365 14.33683097748211 5 23.133178891903388 16.27674335055314 44.210511102026324 16.379566655517152 6 22.941778884470377 18.002337268699183 46.16745745634139 12.88842639048905 7 82.25719866370999 2.705822111552962 8.787676069424313 6.249303155312743 8 84.91460297402989 2.5608784166036926 8.553845963256155 3.970672646110265 9 76.23935118081623 4.882351969541176 10.790046373723484 8.088250475919113 10 46.71977139364808 18.1725738448896 15.55491549080578 19.55273927065654 11 38.16706102914153 19.48811337817916 25.8237220384617 16.521103554217614 12 32.663846252317654 23.214735529374842 24.79125630257306 19.330161915734443 13 20.04331793048484 31.42563067025103 33.50501521702324 15.026036182240887 14 14.98577404475498 38.91283969888051 29.441636418445427 16.659749837919087 15 13.317476245338883 24.53182360641386 41.690720712908245 20.459979435339008 16 16.580154689196945 21.607243881187465 40.648034588273184 21.164566841342403 17 16.54226698546021 21.40634613875778 28.003761928948684 34.04762494683333 18 19.528169043165143 22.449238735892767 33.15411520339606 24.868477017546034 19 23.00010736569996 24.223043982771937 29.567068462151525 23.209780189376577 20 25.618075428533672 20.6568509640201 26.872602338094588 26.852471269351636 21 22.740881142040692 27.097244418015965 29.750416042087352 20.411458397855988 22 26.281058625801627 20.948390133918064 25.0848601974703 27.685691042810006 23 24.325351106486124 25.820005533462997 21.63862770117648 28.216015658874394 24 22.44717401089349 19.923563880526753 32.62348087858179 25.005781229997975 25 26.125894542105936 22.389464947163688 28.031429243938998 23.453211266791378 26 18.12209131865727 29.507294673422447 25.72688643599559 26.643727571924696 27 20.06148751047848 27.01011302304646 23.838385715406567 29.090013751068494 28 20.98235486015618 27.28059199795179 30.25410570566106 21.48294743623097 29 21.714609581149887 22.29262934469758 28.184528602635417 27.80823247151712 30 23.149696691897606 27.52443602036645 24.65704917762003 24.668818110115915 31 23.998505139100523 31.467441351486396 20.699694007755106 23.83435950165797 32 29.18922378728377 24.37511097896871 21.72565585989602 24.710009373851495 33 26.908631789331977 25.70262591725408 24.54194075891032 22.84680153450362 34 19.51020593567143 27.90517131023319 22.704954927053265 29.879667827042116 35 19.93295837927346 22.537299257111947 28.01573733394449 29.5140050296701 36 27.809264834016755 22.705161399553194 25.784801972225317 23.70077179420473 37 26.456663486990166 24.272700619004556 24.071183459075087 25.19945243493019 38 21.10334774511383 26.698546020655513 28.308928283841876 23.889177950388788 39 20.445732832843994 27.60186320783935 25.588343388544082 26.36406057077258 40 24.936509706272222 21.522383683717166 27.95193733146682 25.58916927854379 41 20.17174382543989 20.954274600166002 28.6988515999554 30.175129974438704 42 21.513815074970164 23.98694267910457 24.433439460198297 30.06580278572697 43 21.87359340609424 21.26553189380706 28.073756106424185 28.78711859367451 44 27.630149940329446 23.88639057163976 22.991435520702996 25.492023967327793 45 19.860899476798686 26.236770274567128 26.111131758361104 27.79119849027308 46 22.375528053418563 24.9322770200237 24.547825225158263 28.14436970139947 47 23.497293145525948 22.472983073384455 29.32477298348633 24.704950797603267 48 21.989734187303593 20.165239941692167 33.635299364477646 24.209726506526597 49 21.469836432485558 18.5462890697588 27.814529882764916 32.16934461499073 50 20.85650987145022 21.941419622320506 31.812869843865492 25.38920066236378 51 22.24937335596272 23.75548700668558 27.150617559247287 26.844522078104415 52 19.786775849324627 20.977709228907802 28.714233801200017 30.52128112056755 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 518.0 1 429.0 2 340.0 3 279.0 4 218.0 5 273.5 6 329.0 7 409.5 8 490.0 9 566.0 10 642.0 11 685.0 12 728.0 13 778.5 14 872.0 15 915.0 16 1057.5 17 1200.0 18 1326.0 19 1452.0 20 1304.0 21 1156.0 22 1257.0 23 1358.0 24 1938.0 25 2518.0 26 4250.0 27 5982.0 28 5493.5 29 5005.0 30 6666.5 31 8328.0 32 9222.0 33 10116.0 34 10787.0 35 11458.0 36 13760.5 37 16063.0 38 19355.0 39 33303.5 40 43960.0 41 48730.0 42 53500.0 43 58752.0 44 64004.0 45 71444.5 46 78885.0 47 86480.5 48 94076.0 49 107261.5 50 120447.0 51 120872.0 52 121297.0 53 102715.5 54 84134.0 55 69600.5 56 55067.0 57 48446.5 58 41826.0 59 38897.0 60 35968.0 61 30552.0 62 25136.0 63 21869.5 64 16674.0 65 14745.0 66 11496.0 67 8247.0 68 7285.5 69 6324.0 70 5643.0 71 4962.0 72 4256.5 73 3551.0 74 2170.0 75 789.0 76 636.5 77 484.0 78 297.0 79 110.0 80 138.0 81 166.0 82 100.0 83 34.0 84 25.5 85 17.0 86 19.0 87 21.0 88 12.0 89 2.5 90 2.0 91 1.5 92 1.0 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 968652.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 15.126039890482227 #Duplication Level Percentage of deduplicated Percentage of total 1 65.32360543777993 9.880874616419808 2 12.075190853074247 3.652996370575743 3 5.841555490634523 2.6507880412140974 4 3.4954187276914483 2.114873724359979 5 2.370232892256152 1.7926118638999808 6 1.6358806725699842 1.4846637785617482 7 1.2402525636456163 1.3132076826383507 8 0.9249444361338021 1.1192597149951584 9 0.6742101147018408 0.9178316180591978 >10 4.183642164578108 11.95192052147116 >50 0.6191830936986781 6.804911143541505 >100 1.5865286766876825 49.52808461270264 >500 0.017066788690702266 1.7102115077288986 >1k 0.010240073214421358 3.404727317524287 >5k 0.0020480146428842718 1.6730374863074275 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCTGCTT 5811 0.5999058485400329 TruSeq Adapter, Index 8 (96% over 25bp) GCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCTGCT 5256 0.5426097298100866 TruSeq Adapter, Index 13 (95% over 24bp) GTCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCTGC 5135 0.5301181435644586 TruSeq Adapter, Index 13 (95% over 23bp) TGCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCTGC 4223 0.43596668359741164 TruSeq Adapter, Index 8 (95% over 23bp) TTCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCTGC 3975 0.4103640936063726 TruSeq Adapter, Index 8 (95% over 23bp) ATCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCTGC 3774 0.38961360736363526 TruSeq Adapter, Index 8 (95% over 23bp) GCCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCTGC 3187 0.32901392863484513 TruSeq Adapter, Index 13 (95% over 23bp) GGCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCTGC 2965 0.3060954811428666 TruSeq Adapter, Index 13 (95% over 23bp) AGCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCTGC 2476 0.2556129549105355 TruSeq Adapter, Index 8 (95% over 23bp) ACCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCTGC 2052 0.21184078492585573 TruSeq Adapter, Index 8 (95% over 23bp) CCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCTGCT 1647 0.17003010369048946 TruSeq Adapter, Index 13 (95% over 24bp) TCCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCTGC 1590 0.16414563744254904 TruSeq Adapter, Index 8 (95% over 23bp) CTCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCTGC 1452 0.14989903494753534 TruSeq Adapter, Index 8 (95% over 23bp) AAAAACTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTC 1164 0.12016699495794156 No Hit TCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCTGCT 1158 0.11954757745815835 TruSeq Adapter, Index 13 (95% over 24bp) GACTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCTGC 1132 0.11686343495909779 TruSeq Adapter, Index 8 (95% over 23bp) AACTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCTGC 1099 0.11345663871029019 TruSeq Adapter, Index 13 (95% over 23bp) GTGTGTGTGTGTTTAATGGATATTTTTCAGACAATATATTTTGATTATGTTC 1078 0.11128867746104897 No Hit TTTTTTGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGAAGGCA 980 0.10117152496458998 No Hit TTTTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAAT 973 0.1004488712148429 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.6242696035315056 0.0 2 0.0 0.0 0.0 1.5385298332115145 0.0 3 0.0 0.0 0.0 5.294264606897007 0.0 4 0.0 0.0 0.0 6.1023979716141605 0.0 5 0.0 0.0 0.0 7.415666307404517 0.0 6 0.0 0.0 0.0 11.45891403723938 0.0 7 0.0 0.0 0.0 12.009576194546648 0.0 8 0.0 0.0 0.0 13.116784975409125 0.0 9 0.0 0.0 0.0 13.809706685166603 0.0 10 0.0 0.0 0.0 15.925636864426027 0.0 11 0.0 0.0 0.0 17.588463142594037 0.0 12 0.0 0.0 0.0 18.3311447248341 0.0 13 0.0 0.0 0.0 18.684419172210454 0.0 14 0.0 0.0 0.0 18.85682370965011 0.0 15 0.0 0.0 0.0 19.131432134554 0.0 16 0.0 0.0 0.0 19.76788361558124 0.0 17 0.0 0.0 0.0 20.67976941151208 0.0 18 0.0 0.0 0.0 21.78439728612546 0.0 19 0.0 0.0 0.0 22.392768507162533 0.0 20 0.0 0.0 0.0 23.057919665679727 0.0 21 1.0323624996386731E-4 0.0 0.0 24.07500320032375 0.0 22 1.0323624996386731E-4 0.0 0.0 24.86063106254878 0.0 23 1.0323624996386731E-4 0.0 0.0 25.761780288483376 0.0 24 3.0970874989160195E-4 0.0 0.0 26.373661542019217 0.0 25 3.0970874989160195E-4 0.0 0.0 26.927730495575293 0.0 26 3.0970874989160195E-4 0.0 0.0 27.429665142899616 0.0 27 3.0970874989160195E-4 0.0 0.0 27.88307875274092 0.0 28 3.0970874989160195E-4 0.0 0.0 28.314193332590033 0.0 29 3.0970874989160195E-4 0.0 0.0 28.78391826992563 0.0 30 3.0970874989160195E-4 0.0 0.0 29.33788398723174 0.0 31 3.0970874989160195E-4 0.0 0.0 29.83651507455722 0.0 32 3.0970874989160195E-4 0.0 0.0 30.296226095646322 0.0 33 3.0970874989160195E-4 0.0 0.0 30.758414786734555 0.0 34 3.0970874989160195E-4 0.0 0.0 31.203672732828714 0.0 35 3.0970874989160195E-4 0.0 0.0 31.771472107629986 0.0 36 3.0970874989160195E-4 0.0 0.0 32.25740513620991 0.0 37 3.0970874989160195E-4 0.0 0.0 32.7237232772967 0.0 38 3.0970874989160195E-4 0.0 0.0 33.20377183962868 0.0 39 3.0970874989160195E-4 0.0 0.0 33.66358609696775 0.0 40 3.0970874989160195E-4 0.0 0.0 34.112870256810496 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AACGTTT 35 1.0193435E-7 46.000004 1 AACGTGC 35 1.0193435E-7 46.000004 40 TGTCAGT 35 1.0193435E-7 46.000004 20 CAGGTAG 35 1.0193435E-7 46.000004 11 AGGTAGT 35 1.0193435E-7 46.000004 14 TCGTTGA 85 0.0 46.000004 24 AATCCCC 35 1.0193435E-7 46.000004 45 AAATCTC 35 1.0193435E-7 46.000004 44 TGCCCGC 35 1.0193435E-7 46.000004 27 ACCGGAC 35 1.0193435E-7 46.000004 25 GTCGATA 35 1.0193435E-7 46.000004 8 CGTGCCG 35 1.0193435E-7 46.000004 30 CAACCGT 35 1.0193435E-7 46.000004 37 TTGTACG 35 1.0193435E-7 46.000004 1 TACGGTA 35 1.0193435E-7 46.000004 37 GGTCAAC 35 1.0193435E-7 46.000004 8 CGACATA 35 1.0193435E-7 46.000004 29 TCGATTC 35 1.0193435E-7 46.000004 38 TAACGAT 35 1.0193435E-7 46.000004 15 TCGATCC 35 1.0193435E-7 46.000004 12 >>END_MODULE