SRR1545573_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545573_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1700824
Sequences flagged as poor quality	0
Sequence length	52
%GC	51

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGC	3960	0.23282832321274866	No Hit
CTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGCTT	3887	0.22853628594140252	Illumina Single End Adapter 2 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGCT	3777	0.22206883251882614	No Hit
TGCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGC	3536	0.2078992300202725	No Hit
GCCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGC	3198	0.1880265095036288	No Hit
ATCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGC	2668	0.1568651430130337	No Hit
GGCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGC	2494	0.1466348075991402	No Hit
TTCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGC	2460	0.14463577654125295	No Hit
AGCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGC	2316	0.13616929206078937	No Hit
ACCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGC	1734	0.10195058395224904	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTACGTA	35	1.0199619E-7	46.000004	38
TAGCGTA	25	3.417853E-5	46.0	30
CGATTGT	20	6.312313E-4	46.0	45
TAACGAC	20	6.312313E-4	46.0	15
CTAACGC	25	3.417853E-5	46.0	16
GTATACG	20	6.312313E-4	46.0	1
CGTTACC	30	1.8619339E-6	45.999996	24
TCGTAGA	30	1.8619339E-6	45.999996	17
ACGGGTA	110	0.0	41.81818	5
GTATTCG	40	2.9116745E-7	40.25	1
ACGTACA	40	2.9116745E-7	40.25	12
TATACGG	40	2.9116745E-7	40.25	2
ACGTCAT	35	5.3746317E-6	39.428574	35
ATGGGCG	1150	0.0	39.4	5
CGGGTAT	270	0.0	39.18519	6
TCGATGG	165	0.0	39.030304	2
ATACGAA	445	0.0	38.764046	19
CATACGA	450	0.0	38.333332	18
AACGTCG	30	1.0017684E-4	38.33333	15
CGTACGA	30	1.0017684E-4	38.33333	33