SRR1545571_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545571_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2549684
Sequences flagged as poor quality	0
Sequence length	52
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGCTT	7673	0.30093925364868745	Illumina Single End Adapter 2 (95% over 21bp)
GTCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGC	6368	0.24975644040594835	No Hit
GCCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGC	6151	0.24124558180543157	No Hit
GCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGCT	5819	0.22822436035210636	No Hit
TGCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGC	5030	0.19727934912718595	No Hit
ATCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGC	3946	0.15476427667114825	No Hit
TTCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGC	3926	0.15397986574022507	No Hit
GGCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGC	3426	0.13436959246714494	No Hit
AGCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGC	3223	0.12640782151827443	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTAGACG	35	1.0202348E-7	46.000004	11
GATCGAC	50	1.6370905E-11	46.0	9
CGCATAT	20	6.312909E-4	46.0	43
TTAACGC	30	1.8623032E-6	46.0	22
CGTAAAC	40	5.6152203E-9	46.0	35
ATAACGG	30	1.8623032E-6	46.0	2
ACCGTAG	25	3.418335E-5	46.0	29
CGGTAAC	25	3.418335E-5	46.0	46
ACGGGTA	95	0.0	43.57895	5
ATCCGAT	60	1.8189894E-12	42.166668	34
AGTACGA	55	4.7293724E-11	41.81818	36
CGTTACA	45	1.5897967E-8	40.888885	31
GTATACG	45	1.5897967E-8	40.888885	1
TAAATCG	45	1.5897967E-8	40.888885	38
ACGCAGT	40	2.9124385E-7	40.25	43
GAACGTA	40	2.9124385E-7	40.25	1
CGTTATG	75	0.0	39.866665	1
TACGGGA	390	0.0	39.512817	4
ATTCGAC	35	5.3756885E-6	39.428574	11
TTATCGA	35	5.3756885E-6	39.428574	14