SRR1545570_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545570_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1293441
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ACTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGC	7963	0.6156446254603032	TruSeq Adapter, Index 21 (95% over 22bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5090	0.3935239411770618	No Hit
ATCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTG	3666	0.2834300134292944	TruSeq Adapter, Index 21 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGC	3048	0.2356504857971875	TruSeq Adapter, Index 15 (95% over 21bp)
ATGCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCT	3012	0.23286721234289004	No Hit
ATTGCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTC	2503	0.19351481822518382	No Hit
ATATCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTC	2442	0.18879871598317977	No Hit
CTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGCT	2336	0.1806035219233038	TruSeq Adapter, Index 21 (95% over 23bp)
ATGTCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTC	2329	0.18006232986274598	No Hit
ATGCCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTC	2128	0.16452238640958497	No Hit
ATGGCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTC	2025	0.1565591318042338	No Hit
ATTTCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTC	1935	0.1496009481684901	No Hit
ATAGCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTC	1660	0.1283398315037176	No Hit
ATCCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCT	1600	0.12370104241322179	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCATAAT	25	3.8910774E-5	45.000004	37
GCATAAC	30	2.1657142E-6	45.000004	25
TCGCCAA	25	3.8910774E-5	45.000004	39
ACAACGA	25	3.8910774E-5	45.000004	15
AAGTATT	100	0.0	45.000004	17
CAGGTCG	25	3.8910774E-5	45.000004	20
GTGCAAC	30	2.1657142E-6	45.000004	12
CTAGACA	50	2.1827873E-11	45.000004	39
GGTACTC	25	3.8910774E-5	45.000004	17
CCTTACG	25	3.8910774E-5	45.000004	3
TCGTTAC	60	0.0	45.000004	2
CGAACGA	25	3.8910774E-5	45.000004	26
ACACGAG	25	3.8910774E-5	45.000004	40
TCCGCTA	30	2.1657142E-6	45.000004	2
CTCGTTT	25	3.8910774E-5	45.000004	35
GTCGAAC	25	3.8910774E-5	45.000004	24
AGTCAAT	45	3.8562575E-10	45.000004	32
CGTGCAT	25	3.8910774E-5	45.000004	23
TAGACGG	60	0.0	45.000004	4
CAGCCGA	25	3.8910774E-5	45.000004	28