##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545569_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1094327 Sequences flagged as poor quality 0 Sequence length 52 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.61645467945139 33.0 31.0 34.0 31.0 34.0 2 33.00472345103429 34.0 33.0 34.0 31.0 34.0 3 33.04826893606756 34.0 33.0 34.0 31.0 34.0 4 36.414186984329184 37.0 37.0 37.0 35.0 37.0 5 36.39403487257465 37.0 37.0 37.0 35.0 37.0 6 36.401029125663534 37.0 37.0 37.0 35.0 37.0 7 36.509633774913716 37.0 37.0 37.0 35.0 37.0 8 36.568444349815 37.0 37.0 37.0 35.0 37.0 9 38.382175528886705 39.0 39.0 39.0 37.0 39.0 10 38.138951154453835 39.0 39.0 39.0 35.0 39.0 11 37.8983978280715 39.0 38.0 39.0 35.0 39.0 12 37.16713011741463 39.0 35.0 39.0 35.0 39.0 13 37.01970434796912 39.0 35.0 39.0 35.0 39.0 14 38.132881670652374 40.0 35.0 41.0 35.0 41.0 15 38.11379322633911 40.0 35.0 41.0 35.0 41.0 16 38.1800019555398 40.0 35.0 41.0 35.0 41.0 17 37.99727686514177 40.0 35.0 41.0 34.0 41.0 18 37.92200868661744 40.0 35.0 41.0 34.0 41.0 19 37.96169426505971 40.0 35.0 41.0 34.0 41.0 20 38.01211612251183 40.0 35.0 41.0 34.0 41.0 21 37.986408084603596 40.0 35.0 41.0 34.0 41.0 22 38.120061919334894 40.0 35.0 41.0 34.0 41.0 23 38.17291449447926 40.0 35.0 41.0 35.0 41.0 24 38.163197106532145 40.0 35.0 41.0 35.0 41.0 25 38.1420599144497 40.0 35.0 41.0 35.0 41.0 26 38.03063252574413 40.0 35.0 41.0 35.0 41.0 27 37.94767834477263 40.0 35.0 41.0 34.0 41.0 28 37.92225358599395 40.0 35.0 41.0 34.0 41.0 29 37.91163884286872 40.0 35.0 41.0 34.0 41.0 30 37.81347348644418 40.0 35.0 41.0 34.0 41.0 31 37.730066058865404 40.0 35.0 41.0 34.0 41.0 32 37.6488746051226 40.0 35.0 41.0 34.0 41.0 33 37.576457493966615 40.0 35.0 41.0 34.0 41.0 34 37.3501174694584 39.0 35.0 41.0 33.0 41.0 35 37.297772969139935 39.0 35.0 41.0 33.0 41.0 36 37.31542765553623 39.0 35.0 41.0 33.0 41.0 37 37.375683867801854 39.0 35.0 41.0 34.0 41.0 38 37.332876736112695 39.0 35.0 41.0 34.0 41.0 39 37.27505032773568 39.0 35.0 41.0 34.0 41.0 40 37.1841067615073 39.0 35.0 41.0 34.0 41.0 41 37.087431818825635 38.0 35.0 41.0 34.0 41.0 42 37.109336605968785 38.0 35.0 41.0 33.0 41.0 43 37.03698163346056 38.0 35.0 41.0 33.0 41.0 44 36.90285079322725 38.0 35.0 41.0 33.0 41.0 45 36.835339893834295 38.0 35.0 41.0 33.0 41.0 46 36.831676455026695 38.0 35.0 41.0 33.0 41.0 47 36.84616572560122 38.0 35.0 41.0 33.0 41.0 48 36.77916747005237 38.0 35.0 41.0 33.0 41.0 49 36.769647463692294 38.0 35.0 41.0 33.0 41.0 50 36.691295197870474 37.0 35.0 40.0 33.0 41.0 51 36.60636171820671 37.0 35.0 40.0 33.0 41.0 52 36.33818502147896 37.0 35.0 40.0 32.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 2.0 11 3.0 12 11.0 13 23.0 14 33.0 15 43.0 16 66.0 17 104.0 18 112.0 19 247.0 20 452.0 21 687.0 22 1008.0 23 1527.0 24 2184.0 25 3037.0 26 3915.0 27 4982.0 28 6397.0 29 8200.0 30 10712.0 31 14169.0 32 19452.0 33 28118.0 34 86547.0 35 194432.0 36 58878.0 37 72604.0 38 127138.0 39 448444.0 40 799.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.39542568172036 13.782717597208146 48.463393482935174 12.358463238136316 2 23.444729043512588 12.171864534092643 53.02345642573015 11.359949996664618 3 23.88454273722571 12.715760462823269 47.611362965548686 15.788333834402332 4 22.158550415003926 13.961457589915993 49.6822247829031 14.19776721217698 5 21.92498220367404 15.735790124889542 47.40082260604006 14.938405065396356 6 22.569213772482996 17.82693838313411 46.74992027063209 12.853927573750806 7 84.42503931640178 2.2948350904254395 7.832302410522632 5.447823182650159 8 87.29694140782416 2.02791304610048 7.08362308523869 3.5915224608366603 9 80.40430328411891 3.400720260031965 9.08348235947756 7.111494096371559 10 52.51401089436703 17.905982398314215 12.301807412226875 17.27819929509187 11 43.633118802697915 18.270772812879514 21.734271383233715 16.36183700118886 12 38.622276522465405 21.738657640723478 21.502256638098117 18.136809198713 13 26.495919409829057 26.21291442137497 28.60050058163602 18.690665587159963 14 18.92597002541288 32.40265478234568 29.971114666822622 18.70026052541882 15 19.018446954155387 21.343346184458575 40.08079851817602 19.557408343210028 16 26.099328628462974 21.07880002960724 34.74400247823548 18.077868863694306 17 24.00955107568396 20.145258227202657 28.14405566160755 27.701135035505843 18 24.626825437003745 21.543743323522126 32.25132889894885 21.578102340525273 19 26.20697469769091 27.26470241527441 27.05635518451066 19.47196770252402 20 30.39566783968594 24.330661676080368 22.760747016202654 22.512923468031037 21 26.986906107589416 30.410471458713893 25.383820375445364 17.218802058251327 22 28.587707330624212 22.19610774476002 26.143465344453716 23.072719580162055 23 26.80953682034712 25.39030838131564 22.920297132392786 24.879857665944456 24 30.472153204663687 17.40741113031114 29.0642559308141 23.05617973421107 25 32.37478377121281 19.60465199158935 23.66915921840547 24.35140501879237 26 21.1323489231281 25.003952200759006 25.347816511883558 28.515882364229338 27 18.695051844649726 22.713960269645177 29.187802183442425 29.403185702262668 28 18.666175649508784 27.858217881857982 29.802792035652963 23.67281443298027 29 21.68848982068431 23.836202524473947 29.355485152061494 25.11982250278025 30 24.118019568191226 28.20582878792171 29.043329827373356 18.63282181651371 31 30.80989503137545 27.458520168103316 22.876069036037673 18.85551576448356 32 33.895261653966315 23.599984282577328 24.36127409814434 18.143479965312014 33 31.64109082568556 28.343630377391765 21.508470502875284 18.506808294047392 34 24.598588904413397 21.723854021695526 29.313907086273115 24.36364998761796 35 21.598571542144168 27.383862410412974 30.87212505951146 20.145440987931394 36 22.423462091312743 32.27453951149885 24.40550219449945 20.896496202688958 37 25.918395507010246 30.727469942713647 22.975856393929785 20.378278156346322 38 24.214243091872905 28.988044706929468 25.381901387793594 21.415810813404036 39 26.767227711643777 29.034009030207606 20.903166969287973 23.295596288860644 40 28.861482902276926 22.720265514786714 22.723189686446556 25.695061896489808 41 21.147152542156046 24.878578340843276 23.830262800789892 30.144006316210785 42 19.483390248070275 25.248486055813295 22.50396819232277 32.76415550379366 43 18.859262359422733 20.682392008969895 26.750413724599685 33.70793190700769 44 24.74233021756751 20.135206387121947 24.466087376076803 30.65637601923374 45 21.53195525651839 22.836135816807957 26.897079209413636 28.734829717260013 46 22.78450591093887 26.23667331611118 24.013297670623132 26.965523102326816 47 22.201773327350967 23.359471163555316 27.63917914846294 26.799576360630777 48 19.71768950231512 19.874589587938523 35.74982614885678 24.65789476088957 49 23.386062849587006 18.131874659037013 28.83818090936256 29.64388158201342 50 20.569994160794717 21.44505253000246 31.38531718581375 26.599636123389082 51 21.226836219886742 22.436803624510773 29.338214263195557 26.99814589240693 52 18.67503954485268 19.718694686323193 30.09530058200154 31.510965186822588 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 340.0 1 263.0 2 186.0 3 154.0 4 122.0 5 145.0 6 168.0 7 243.0 8 318.0 9 427.5 10 537.0 11 512.5 12 488.0 13 614.5 14 635.0 15 529.0 16 626.5 17 724.0 18 699.5 19 675.0 20 604.0 21 533.0 22 968.0 23 1403.0 24 1708.0 25 2013.0 26 2612.0 27 3211.0 28 4176.0 29 5141.0 30 6380.5 31 7620.0 32 9873.5 33 12127.0 34 13544.0 35 14961.0 36 14723.5 37 14486.0 38 20344.5 39 31629.5 40 37056.0 41 52441.5 42 67827.0 43 78817.0 44 89807.0 45 103765.5 46 117724.0 47 119199.5 48 120675.0 49 108579.0 50 96483.0 51 83234.0 52 69985.0 53 70681.0 54 71377.0 55 68901.5 56 66426.0 57 64305.0 58 62184.0 59 61408.0 60 60632.0 61 57690.0 62 54748.0 63 46174.0 64 29849.5 65 22099.0 66 17161.5 67 12224.0 68 9478.0 69 6732.0 70 4986.0 71 3240.0 72 2667.0 73 2094.0 74 1656.0 75 1218.0 76 927.0 77 636.0 78 585.0 79 534.0 80 376.0 81 218.0 82 203.0 83 188.0 84 112.5 85 37.0 86 28.5 87 20.0 88 16.0 89 12.0 90 12.0 91 9.5 92 7.0 93 5.0 94 3.0 95 2.0 96 1.0 97 1.5 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 1094327.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 15.698729275182782 #Duplication Level Percentage of deduplicated Percentage of total 1 63.13034829402334 9.910662469158696 2 13.615621234488215 4.27495903347321 3 6.302458996942844 2.968217926828372 4 3.8087940601312744 2.391729072597005 5 2.377074814940315 1.865852699330161 6 1.6226403058133931 1.5284034523178553 7 1.191019542641741 1.3088245352969292 8 0.8594308357217324 1.0793577616591652 9 0.6627488811560439 0.936388373642912 >10 3.694738462760262 11.286313646862297 >50 1.0130738295274322 11.966938540009037 >100 1.7034087852433457 45.43021212438562 >500 0.01048610059315329 1.0748670523016646 >1k 0.007573294872832932 3.4236980319888635 >5k 5.825611440640718E-4 0.5535752801482153 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGCTT 6053 0.5531253455320028 TruSeq Adapter, Index 21 (95% over 24bp) TTCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGC 4665 0.4262893997863527 TruSeq Adapter, Index 21 (95% over 22bp) GTCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGC 4498 0.4110288789365518 TruSeq Adapter, Index 15 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGCT 4390 0.4011597995845849 TruSeq Adapter, Index 15 (95% over 22bp) TGCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGC 4248 0.3881837878440356 TruSeq Adapter, Index 21 (95% over 22bp) ATCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGC 3369 0.3078604475627486 TruSeq Adapter, Index 21 (95% over 22bp) GCCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGC 3113 0.28446707428401197 TruSeq Adapter, Index 15 (95% over 21bp) GGCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGC 3112 0.2843756939196419 TruSeq Adapter, Index 15 (95% over 21bp) CCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGCT 2190 0.2001229979704421 TruSeq Adapter, Index 15 (95% over 22bp) AGCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGC 2088 0.19080220080469548 TruSeq Adapter, Index 21 (95% over 22bp) TCCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGC 1880 0.171795085015722 TruSeq Adapter, Index 21 (95% over 22bp) CTCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGC 1488 0.13597398218265655 TruSeq Adapter, Index 21 (95% over 22bp) ACCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGC 1281 0.11705824675805312 TruSeq Adapter, Index 21 (95% over 22bp) TCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGCT 1114 0.10179772590825228 TruSeq Adapter, Index 15 (95% over 22bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.5679289645599532 0.0 2 0.0 0.0 0.0 1.3218169706129885 0.0 3 0.0 0.0 0.0 4.468317056967433 0.0 4 0.0 0.0 0.0 5.095826019096669 0.0 5 0.0 0.0 0.0 6.203356035261855 0.0 6 0.0 0.0 0.0 9.610929822621575 0.0 7 0.0 0.0 0.0 10.049829712690997 0.0 8 0.0 0.0 0.0 10.92753811246547 0.0 9 0.0 0.0 0.0 11.529917474392937 0.0 10 0.0 0.0 0.0 13.411987458958794 0.0 11 0.0 0.0 0.0 15.001274756082962 0.0 12 0.0 0.0 0.0 15.65994442246239 0.0 13 0.0 0.0 0.0 15.962047907069824 0.0 14 0.0 0.0 0.0 16.1074340667826 0.0 15 0.0 0.0 0.0 16.33716430280894 0.0 16 0.0 0.0 0.0 16.921450352591137 0.0 17 0.0 0.0 0.0 17.667571027672714 0.0 18 0.0 0.0 0.0 18.542994918337936 0.0 19 1.8276072874012978E-4 0.0 0.0 19.133677593626036 0.0 20 1.8276072874012978E-4 0.0 0.0 19.792712781462946 0.0 21 1.8276072874012978E-4 0.0 0.0 20.751201423340554 0.0 22 2.741410931101947E-4 0.0 0.0 21.550048568663662 0.0 23 3.6552145748025957E-4 0.0 0.0 22.331076542934607 0.0 24 3.6552145748025957E-4 0.0 0.0 23.01323096295714 0.0 25 3.6552145748025957E-4 0.0 0.0 23.61359995686847 0.0 26 3.6552145748025957E-4 0.0 0.0 24.150002695720747 0.0 27 4.5690182185032446E-4 0.0 0.0 24.58908534651891 0.0 28 4.5690182185032446E-4 0.0 0.0 25.033011156628685 0.0 29 4.5690182185032446E-4 0.0 0.0 25.47510935945106 0.0 30 4.5690182185032446E-4 0.0 0.0 25.978889308223227 0.0 31 4.5690182185032446E-4 0.0 0.0 26.441365332300126 0.0 32 4.5690182185032446E-4 0.0 0.0 26.905120681478206 0.0 33 4.5690182185032446E-4 0.0 0.0 27.395467716687975 0.0 34 4.5690182185032446E-4 0.0 0.0 27.937170516673717 0.0 35 4.5690182185032446E-4 0.0 0.0 28.534615338925203 0.0 36 4.5690182185032446E-4 0.0 0.0 29.03784700551115 0.0 37 4.5690182185032446E-4 0.0 0.0 29.546561493959302 0.0 38 4.5690182185032446E-4 0.0 0.0 30.158170272688146 0.0 39 4.5690182185032446E-4 0.0 0.0 30.793903467610686 0.0 40 4.5690182185032446E-4 0.0 0.0 31.565427883987144 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TGATCCG 20 6.31132E-4 46.000004 6 ATCCTTA 20 6.31132E-4 46.000004 10 CTTGTAC 35 1.0195072E-7 46.000004 16 TTGATAC 35 1.0195072E-7 46.000004 30 ACAACCC 20 6.31132E-4 46.000004 28 AGCGTTA 20 6.31132E-4 46.000004 20 GTGCAAC 35 1.0195072E-7 46.000004 10 AACGTAC 35 1.0195072E-7 46.000004 18 AAGTACG 35 1.0195072E-7 46.000004 25 AGCGTAC 20 6.31132E-4 46.000004 31 CGTGGAC 20 6.31132E-4 46.000004 14 CGGAAAG 35 1.0195072E-7 46.000004 20 GGTACTC 40 5.6115823E-9 46.000004 15 ACAGTTC 40 5.6115823E-9 46.000004 28 GCCCATA 20 6.31132E-4 46.000004 37 CCGGGTT 20 6.31132E-4 46.000004 35 GCCTTCG 20 6.31132E-4 46.000004 1 AGTCCCG 20 6.31132E-4 46.000004 11 AGTCCCC 20 6.31132E-4 46.000004 20 TCGCAGA 20 6.31132E-4 46.000004 14 >>END_MODULE