SRR1545566_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545566_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1238591
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ACTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCTGC	3348	0.27030714739571016	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3257	0.2629600893273082	No Hit
ATCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCTG	2014	0.16260412032704905	No Hit
CTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCTGCT	1673	0.1350728367960045	No Hit
ATGCCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTC	1355	0.10939850200752306	No Hit
ATGCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCT	1249	0.1008403904113626	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGCGAA	20	7.033498E-4	45.000004	13
CCTTACG	20	7.033498E-4	45.000004	27
ACACGGT	20	7.033498E-4	45.000004	30
CCCTCGA	20	7.033498E-4	45.000004	22
CGTGCTA	20	7.033498E-4	45.000004	37
GCAACTA	20	7.033498E-4	45.000004	43
GACGTAA	20	7.033498E-4	45.000004	18
ATTCGTC	40	6.8157533E-9	45.000004	1
CGACACG	20	7.033498E-4	45.000004	36
TAGCCCG	20	7.033498E-4	45.000004	26
CTAACGG	20	7.033498E-4	45.000004	4
CCGTAGA	20	7.033498E-4	45.000004	3
TACGCAC	20	7.033498E-4	45.000004	25
CTACGTC	20	7.033498E-4	45.000004	36
CTAGTAA	20	7.033498E-4	45.000004	39
CTACGGT	20	7.033498E-4	45.000004	5
GGACGTA	20	7.033498E-4	45.000004	17
CCGACAC	20	7.033498E-4	45.000004	37
CGTCGGT	40	6.8157533E-9	45.000004	22
CGAGAAT	40	6.8157533E-9	45.000004	40