##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545561_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1385305 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.325926781466897 31.0 31.0 33.0 30.0 34.0 2 31.667956154059937 31.0 31.0 34.0 30.0 34.0 3 31.795260249547933 31.0 31.0 34.0 30.0 34.0 4 35.500874536654386 37.0 35.0 37.0 33.0 37.0 5 35.374597651780654 37.0 35.0 37.0 33.0 37.0 6 35.44693984357235 37.0 35.0 37.0 33.0 37.0 7 35.827456769447885 37.0 35.0 37.0 35.0 37.0 8 35.83631763402283 37.0 35.0 37.0 35.0 37.0 9 37.519653072789026 39.0 37.0 39.0 35.0 39.0 10 36.935360805021276 39.0 37.0 39.0 32.0 39.0 11 36.55715672721892 39.0 35.0 39.0 32.0 39.0 12 35.675441870201865 37.0 35.0 39.0 31.0 39.0 13 35.316523076145685 37.0 35.0 39.0 30.0 39.0 14 36.28481092611374 38.0 35.0 40.0 31.0 41.0 15 36.548259047646546 38.0 35.0 40.0 31.0 41.0 16 36.72958879091608 38.0 35.0 41.0 32.0 41.0 17 36.67500369954631 38.0 35.0 40.0 32.0 41.0 18 36.611663135554984 38.0 35.0 40.0 31.0 41.0 19 36.56661890341838 37.0 35.0 40.0 31.0 41.0 20 36.40708869165996 37.0 35.0 40.0 31.0 41.0 21 36.201115999725694 37.0 35.0 40.0 31.0 41.0 22 36.11522155770751 37.0 35.0 40.0 30.0 41.0 23 36.09350431854357 37.0 35.0 40.0 31.0 41.0 24 36.0150053598305 37.0 34.0 40.0 31.0 41.0 25 35.897623267078366 37.0 34.0 40.0 30.0 41.0 26 35.80619502564417 37.0 34.0 40.0 30.0 41.0 27 35.74980527753816 37.0 34.0 40.0 30.0 41.0 28 35.73003923323745 36.0 34.0 40.0 30.0 41.0 29 35.75387802686051 36.0 34.0 40.0 30.0 41.0 30 35.669360898863424 36.0 34.0 40.0 30.0 41.0 31 35.488005890399585 36.0 34.0 40.0 29.0 41.0 32 35.31386012466569 36.0 34.0 40.0 29.0 41.0 33 35.16901620942681 36.0 34.0 40.0 28.0 41.0 34 35.01479962896258 36.0 34.0 40.0 27.0 41.0 35 34.85878994156521 36.0 34.0 40.0 27.0 41.0 36 34.683016375455225 36.0 33.0 40.0 25.0 41.0 37 34.61484799376311 36.0 33.0 40.0 25.0 41.0 38 34.642278054291296 35.0 33.0 40.0 26.0 41.0 39 34.59086266201306 36.0 33.0 40.0 25.0 41.0 40 34.38937995603856 36.0 33.0 40.0 24.0 41.0 41 34.362821905645326 35.0 33.0 40.0 24.0 41.0 42 34.322515258372704 35.0 33.0 40.0 24.0 41.0 43 34.24991608346176 35.0 33.0 40.0 24.0 41.0 44 34.19089153652084 35.0 33.0 40.0 24.0 41.0 45 34.14017418546818 35.0 33.0 40.0 24.0 41.0 46 34.1255326444357 35.0 33.0 40.0 24.0 41.0 47 34.072530597954966 35.0 33.0 40.0 24.0 41.0 48 34.033380374718924 35.0 33.0 40.0 24.0 41.0 49 33.986546644962665 35.0 33.0 39.0 24.0 41.0 50 33.84849834512977 35.0 33.0 39.0 24.0 41.0 51 33.679152244451586 35.0 33.0 39.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 2.0 12 5.0 13 6.0 14 7.0 15 38.0 16 128.0 17 357.0 18 771.0 19 1406.0 20 2596.0 21 3994.0 22 6138.0 23 8484.0 24 12446.0 25 17429.0 26 22838.0 27 26850.0 28 29758.0 29 34083.0 30 40488.0 31 48776.0 32 61317.0 33 79159.0 34 137826.0 35 209526.0 36 94118.0 37 113179.0 38 160339.0 39 273081.0 40 158.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.22488188521661 23.563258632575497 28.225120099905798 13.986739382302094 2 31.87074326592339 24.825218995094943 29.905977384041783 13.398060354939886 3 30.253843016519827 24.616889421463142 30.738212884527233 14.391054677489794 4 25.951108239701725 28.223459815708452 30.294844817567252 15.530587127022569 5 23.258632575497813 33.337351702332704 28.802971186850552 14.601044535318938 6 21.51150829600702 41.812669412151116 26.181093694168432 10.494728597673436 7 86.55494638364837 4.620931852552326 6.837555628543894 1.9865661352554131 8 87.67332825623238 3.697380721213018 6.7657302904414545 1.8635607321131447 9 82.99450301558142 5.721411530312819 8.158347800664835 3.1257376534409387 10 51.34609345956306 23.038464453676266 13.933249356639873 11.682192730120804 11 45.27797127708338 21.977181920226954 19.496139839241177 13.24870696344848 12 41.407271322921666 21.30671584957825 24.033696550579116 13.252316276920967 13 21.95451543161975 39.55172326671744 23.727843326920787 14.765917974742024 14 15.764181894961759 42.10300258787776 27.125939774995402 15.006875742165082 15 15.089023716798827 23.834462446897973 46.56187626551554 14.514637570787661 16 16.542566438437746 18.985782914231883 46.277895481500465 18.19375516582991 17 16.81218215483233 18.26240430807656 29.233490097848485 35.69192343924262 18 21.183060770010936 24.073398998776444 34.736032859189855 20.00750737202277 19 29.55226466373831 24.107470917956693 26.40674797246816 19.933516445836837 20 32.51486134822296 22.14386001638628 25.250757053500855 20.09052158188991 21 23.151941269251175 26.791139857287742 28.43012910514291 21.62678976831817 22 22.48198050248862 24.641432753076035 25.736787205705603 27.139799538729736 23 20.285929813290213 30.458057972792997 25.12609136616124 24.12992084775555 24 20.22146747467164 23.09289290084133 39.09969284742349 17.585946777063537 25 18.728583236182644 25.354272163891707 34.884231270370066 21.032913329555587 26 18.326216970270085 33.73184966487525 27.447818350471557 20.494115014383112 27 19.325924615878815 33.65713687599482 28.00256983119241 19.01436867693396 28 16.646153735098046 29.518337117096955 36.65322798950412 17.18228115830088 29 17.270637152107298 25.02423653996773 35.75400363096936 21.951122676955617 30 19.06035133057341 31.281703307213938 30.2719617701517 19.385983592060953 31 28.070641483283467 28.096484167746453 24.47266125510267 19.360213093867415 32 29.340109217825677 26.777063534745054 26.87805212570517 17.004775121724098 33 28.87905551485052 28.46853220049014 24.265703220590414 18.386709064068924 34 20.431024214884086 28.213931228141092 27.610020897925008 23.745023659049814 35 20.753913398132543 26.550759580020284 30.396410898682962 22.298916123164215 36 30.134735671927842 27.45070580124954 23.882755061159816 18.531803465662797 37 20.681366197335606 34.06599990615785 27.915080072619386 17.33755382388716 38 20.934090326678962 33.093723042940006 23.75209791345588 22.220088716925154 39 21.726334633889287 31.714099061217567 26.533434875352356 20.026131429540786 40 25.21170428172857 26.394837238008957 26.300850715185465 22.092607765077005 41 17.502282890771344 26.430641627656005 27.790414385279778 28.276661096292877 42 22.222254305008644 26.623956457242272 24.35377046931903 26.800018768430057 43 22.53828579265938 26.274286168027977 26.26454102165227 24.92288701766037 44 19.821411169381474 30.460079188337584 28.78160405109344 20.9369055911875 45 18.031913549723708 37.17210289430847 23.17395808143333 21.62202547453449 46 21.501907522170207 34.31749686892056 25.160740775497093 19.019854833412136 47 22.114913322336957 28.394324715495866 26.19322098743598 23.297540974731195 48 22.870487004666842 25.15106781539083 30.69526205420467 21.283183125737654 49 21.423441047278395 25.411732434373658 31.929214144177635 21.23561237417031 50 19.997184735491462 33.467792291228285 26.64048711294625 19.894535860334006 51 19.19938208553351 34.03012333024136 24.554809229736414 22.215685354488723 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 935.0 1 2006.0 2 3077.0 3 6363.0 4 9649.0 5 7447.0 6 5245.0 7 5440.5 8 5636.0 9 5791.0 10 5946.0 11 6483.0 12 7020.0 13 7048.5 14 7077.0 15 6536.5 16 5996.0 17 5756.5 18 5517.0 19 5436.0 20 5355.0 21 5944.5 22 6534.0 23 6726.0 24 6918.0 25 7376.5 26 10404.5 27 12974.0 28 14833.5 29 16693.0 30 19423.0 31 22153.0 32 25036.5 33 27920.0 34 33093.0 35 38266.0 36 40211.5 37 42157.0 38 49194.5 39 56232.0 40 75849.0 41 95466.0 42 116414.0 43 137362.0 44 136656.0 45 135950.0 46 131818.0 47 127686.0 48 117823.5 49 107961.0 50 100970.0 51 93979.0 52 86213.0 53 78447.0 54 69085.0 55 59723.0 56 56911.0 57 54099.0 58 52608.5 59 51118.0 60 46846.5 61 42575.0 62 37019.0 63 31463.0 64 25679.0 65 19895.0 66 17478.5 67 15062.0 68 13686.0 69 12310.0 70 10844.5 71 9379.0 72 7497.5 73 5616.0 74 4821.5 75 3018.0 76 2009.0 77 1486.0 78 963.0 79 773.0 80 583.0 81 427.5 82 272.0 83 217.0 84 162.0 85 94.5 86 27.0 87 21.0 88 15.0 89 11.0 90 7.0 91 7.5 92 8.0 93 7.0 94 6.0 95 3.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1385305.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 16.261577536170712 #Duplication Level Percentage of deduplicated Percentage of total 1 80.5006504750618 13.090675694123949 2 6.781905612630353 2.2056896792555962 3 2.2995590923819873 1.1218337543932808 4 1.1165971110540738 0.7263052199228016 5 0.6680028348195859 0.5431389946400267 6 0.4658805976948692 0.45455720772076025 7 0.34342960222295577 0.39092949733354027 8 0.27802460356899394 0.3616894918320256 9 0.24964898024095317 0.3653717624112789 >10 3.9047482918899945 16.06897268559547 >50 1.7399674662240878 20.511709224631236 >100 1.6439969671704584 42.66687252212423 >500 0.005356492969330845 0.52292050454217 >1k 0.0017854976564436148 0.5891929116280946 >5k 4.463744141109037E-4 0.3801408498455503 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 5237 0.37803949310801593 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4712 0.3401417016469297 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.023388351301698904 0.0 2 0.0 0.0 0.0 0.07456841634152768 0.0 3 0.0 0.0 0.0 0.10712442386333695 0.0 4 0.0 0.0 0.0 0.1597482142921595 0.0 5 0.0 0.0 0.0 0.26463486380255613 0.0 6 0.0 0.0 0.0 0.3666340625349652 0.0 7 0.0 0.0 0.0 0.4258268034837094 0.0 8 0.0 0.0 0.0 0.5653628623299563 0.0 9 0.0 0.0 0.0 0.6161819960225365 0.0 10 0.0 0.0 0.0 0.7062704602957471 0.0 11 7.218626944968797E-5 0.0 0.0 0.8361335590357358 0.0 12 7.218626944968797E-5 0.0 0.0 0.9403705321210852 0.0 13 1.4437253889937595E-4 0.0 0.0 0.983682293790898 0.0 14 1.4437253889937595E-4 0.0 0.0 1.000573880842125 0.0 15 1.4437253889937595E-4 0.0 0.0 1.0282212220413556 0.0 16 1.4437253889937595E-4 0.0 0.0 1.0921060705043293 0.0 17 1.4437253889937595E-4 0.0 0.0 1.1698506827016433 0.0 18 1.4437253889937595E-4 0.0 0.0 1.2803678612291156 0.0 19 1.4437253889937595E-4 0.0 0.0 1.3333525830051867 0.0 20 1.4437253889937595E-4 0.0 0.0 1.3830889226560217 0.0 21 1.4437253889937595E-4 0.0 0.0 1.4475512612745929 0.0 22 1.4437253889937595E-4 0.0 0.0 1.5231302853884163 0.0 23 1.4437253889937595E-4 0.0 0.0 1.612280328158781 0.0 24 1.4437253889937595E-4 0.0 0.0 1.6768870393162516 0.0 25 1.4437253889937595E-4 0.0 0.0 1.7308823688646182 0.0 26 1.4437253889937595E-4 0.0 0.0 1.785094257221334 0.0 27 1.4437253889937595E-4 0.0 0.0 1.8424823414338358 0.0 28 2.1655880834906392E-4 0.0 0.0 1.90398504300497 0.0 29 2.1655880834906392E-4 0.0 0.0 1.9698189207430854 0.0 30 2.1655880834906392E-4 0.0 0.0 2.0480688368265474 0.0 31 2.1655880834906392E-4 0.0 0.0 2.1244419099043172 0.0 32 2.1655880834906392E-4 0.0 0.0 2.1965559930845555 0.0 33 2.1655880834906392E-4 0.0 0.0 2.268597889995344 0.0 34 2.1655880834906392E-4 0.0 0.0 2.3475696687733025 0.0 35 2.1655880834906392E-4 0.0 0.0 2.4510847791641552 0.0 36 2.1655880834906392E-4 0.0 0.0 2.53785267504268 0.0 37 2.1655880834906392E-4 0.0 0.0 2.628374256932589 0.0 38 2.1655880834906392E-4 0.0 0.0 2.712615633380375 0.0 39 2.1655880834906392E-4 0.0 0.0 2.8110055186402993 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAATACG 30 2.1658252E-6 45.000004 18 ACGTTAG 35 1.2121745E-7 45.000004 1 GACGTAT 30 2.1658252E-6 45.000004 11 TACGACT 30 2.1658252E-6 45.000004 21 TAGGCCC 30 2.1658252E-6 45.000004 35 CGACTCA 30 2.1658252E-6 45.000004 23 GGTTCGA 30 2.1658252E-6 45.000004 38 TACGTAA 35 1.2121745E-7 45.000004 18 ACACGGC 55 1.8189894E-12 45.0 31 GCGCGTT 20 7.03379E-4 45.0 25 CGCATCG 20 7.03379E-4 45.0 21 TTCGTAA 20 7.03379E-4 45.0 32 ACTTACG 40 6.8175723E-9 45.0 1 ATCCGTT 25 3.891222E-5 45.0 16 ATATCCG 20 7.03379E-4 45.0 2 CGTAGTG 25 3.891222E-5 45.0 45 ACAATCG 45 3.8562575E-10 45.0 23 CGAATAC 20 7.03379E-4 45.0 27 CGTACTA 25 3.891222E-5 45.0 26 AGCGAAT 20 7.03379E-4 45.0 25 >>END_MODULE