SRR1545558_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545558_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2617604
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11157	0.42622948314565534	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	6925	0.2645549135774548	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGCGCA	40	6.8212103E-9	45.000004	23
CGACATA	20	7.0349395E-4	45.000004	43
ATCGTAC	40	6.8212103E-9	45.000004	28
AACGCAT	35	1.2127202E-7	45.000004	38
TCGTAAT	35	1.2127202E-7	45.000004	17
ACGCGGT	75	0.0	45.000004	23
TACGCGC	110	0.0	45.0	34
ACGTAAG	100	0.0	45.0	1
TTCGATC	25	3.8921768E-5	45.0	17
TCGAACA	25	3.8921768E-5	45.0	25
TATATCG	30	2.1665692E-6	44.999996	27
CGTCGGA	30	2.1665692E-6	44.999996	19
CGACGGT	250	0.0	44.100002	28
CGGTCTA	250	0.0	43.2	31
TACGGGA	820	0.0	42.80488	4
TCTAGCG	80	0.0	42.187504	1
CGTTATC	135	0.0	41.666664	34
CGTTTTT	8005	0.0	41.37414	1
AACCGAG	60	3.6379788E-12	41.249996	1
TACGCCT	55	6.184564E-11	40.909092	35