SRR1545553_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545553_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2587979
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9255	0.35761495746294697	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	5204	0.2010835482049893	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	3650	0.14103669311072461	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2965	0.11456816303378041	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGTCGAT	30	2.1665583E-6	45.000004	13
AGTCGAT	30	2.1665583E-6	45.000004	43
TAGCGAT	25	3.8921644E-5	45.0	31
CAATTCG	25	3.8921644E-5	45.0	1
TATCTCG	20	7.034925E-4	45.0	30
CTATTCG	20	7.034925E-4	45.0	28
CGCCGAT	20	7.034925E-4	45.0	20
GCTCGAT	50	2.1827873E-11	45.0	11
TCGAATA	40	6.8212103E-9	45.0	42
TCGGTAA	20	7.034925E-4	45.0	38
ATACCCG	35	1.2127202E-7	45.0	19
GTATGCG	95	0.0	42.63158	1
CGGTCTA	325	0.0	42.230766	31
ACGTAAG	145	0.0	41.896553	1
AAACTCG	65	0.0	41.53846	19
CGATATC	65	0.0	41.53846	10
CGTGCTA	60	3.6379788E-12	41.250004	45
ACCGAAT	60	3.6379788E-12	41.250004	25
CATACGA	865	0.0	41.098267	18
ACGCATC	55	6.184564E-11	40.909092	23