SRR1545552_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545552_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1302235
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	6203	0.47633491650892507	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4852	0.37259020069342325	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	3331	0.2557910054636836	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAGTGT	30	2.1657252E-6	45.000004	32
ACGTTAG	30	2.1657252E-6	45.000004	1
CGTGACA	30	2.1657252E-6	45.000004	26
CCCGTGA	30	2.1657252E-6	45.000004	24
ACGGCAT	30	2.1657252E-6	45.000004	39
TAATGCG	60	0.0	45.000004	1
GTAACGT	30	2.1657252E-6	45.000004	9
AACACGT	55	1.8189894E-12	45.000004	41
TAGAGTC	20	7.0336333E-4	45.0	29
AACAAGT	25	3.8910934E-5	45.0	36
GGTAATC	25	3.8910934E-5	45.0	8
CTCGTAG	45	3.8562575E-10	45.0	1
ACGCATA	20	7.0336333E-4	45.0	18
ACACCGA	20	7.0336333E-4	45.0	11
TAGGTCG	20	7.0336333E-4	45.0	1
CGGTTGA	25	3.8910934E-5	45.0	40
GGCGTAG	20	7.0336333E-4	45.0	1
TTATGAG	35	1.2121018E-7	45.0	1
TAGCGCG	25	3.8910934E-5	45.0	1
GCGTTAG	35	1.2121018E-7	45.0	1