SRR1545550_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545550_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1052785
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4097	0.3891582801806637	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3910	0.37139586905208566	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1764	0.16755557877439362	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1299	0.12338701634236811	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATGCG	40	6.8139343E-9	45.000004	1
ACTATCG	20	7.0330146E-4	45.000004	7
TGCCCCG	20	7.0330146E-4	45.000004	22
GTCGATC	20	7.0330146E-4	45.000004	9
GGCGTAT	20	7.0330146E-4	45.000004	8
TAAGTCG	40	6.8139343E-9	45.000004	1
TAACGTG	20	7.0330146E-4	45.000004	17
TCGATTG	45	3.8562575E-10	45.000004	1
CGTTCAC	45	3.8562575E-10	45.000004	21
TCGGCGA	20	7.0330146E-4	45.000004	11
CCCGTTC	20	7.0330146E-4	45.000004	32
GCCGAAT	20	7.0330146E-4	45.000004	41
CTACGAT	20	7.0330146E-4	45.000004	19
TATTCGA	20	7.0330146E-4	45.000004	35
TCGTAAT	20	7.0330146E-4	45.000004	43
TCATCGG	20	7.0330146E-4	45.000004	2
CGTAATC	20	7.0330146E-4	45.000004	44
TTACGAG	40	6.8139343E-9	45.000004	1
ATGCATC	20	7.0330146E-4	45.000004	36
CCCGCAT	20	7.0330146E-4	45.000004	45