SRR1545549_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545549_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1393330
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5286	0.37937889803564123	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3568	0.25607716764872646	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1644	0.11799071289644233	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1580	0.11339740047224993	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGATAT	145	0.0	45.000004	9
ATGCGAG	60	0.0	45.000004	1
TATCCGG	30	2.1658343E-6	45.000004	2
TAGACGT	35	1.2121745E-7	45.0	22
CGTTACA	20	7.0338027E-4	45.0	35
ACCTAGT	20	7.0338027E-4	45.0	9
TACGATA	35	1.2121745E-7	45.0	42
CTACGAT	35	1.2121745E-7	45.0	41
TGACACG	50	2.1827873E-11	45.0	1
TCTAACG	50	2.1827873E-11	45.0	1
ACTACGT	20	7.0338027E-4	45.0	17
TCGTCGG	25	3.8912334E-5	45.0	33
GAACGTA	25	3.8912334E-5	45.0	20
TCGTAAG	20	7.0338027E-4	45.0	1
TTACGTA	25	3.8912334E-5	45.0	21
AACCTAG	25	3.8912334E-5	45.0	31
ACCGTTG	20	7.0338027E-4	45.0	1
ACGTATG	45	3.8562575E-10	45.0	1
TCGAGTA	25	3.8912334E-5	45.0	26
CACAACG	20	7.0338027E-4	45.0	12