SRR1545548_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545548_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2254604
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9134	0.4051265765518024	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	7542	0.33451550693602955	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	5587	0.2478040489593738	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACCGTA	20	7.03473E-4	45.000004	15
AACCGGC	20	7.03473E-4	45.000004	34
TCCGAAC	20	7.03473E-4	45.000004	36
CACGCGA	20	7.03473E-4	45.000004	33
TAGCCGT	35	1.2126293E-7	45.000004	44
CCGTAGT	35	1.2126293E-7	45.000004	40
CGAGGTA	20	7.03473E-4	45.000004	21
CGCTACG	20	7.03473E-4	45.000004	33
CGATCAT	35	1.2126293E-7	45.000004	10
GTGCGTA	20	7.03473E-4	45.000004	21
CAATACG	20	7.03473E-4	45.000004	1
CCGTTAT	35	1.2126293E-7	45.000004	37
GACTATC	20	7.03473E-4	45.000004	28
TACCGTT	35	1.2126293E-7	45.000004	36
CCTTACG	25	3.8920036E-5	45.0	29
TCGTTAG	45	3.8562575E-10	45.0	1
TACCCGC	25	3.8920036E-5	45.0	14
ATCTACG	105	0.0	45.0	1
ACGTTGT	45	3.8562575E-10	45.0	14
ACGCATC	25	3.8920036E-5	45.0	24