SRR1545545_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545545_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1570211
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6780	0.43178910350265026	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3862	0.24595420615445948	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1963	0.1250150457486287	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GACGTAT	20	7.034077E-4	45.0	43
CGACCGT	20	7.034077E-4	45.0	16
CCTACGG	20	7.034077E-4	45.0	26
CACGATT	25	3.8914608E-5	45.0	26
CGACACT	20	7.034077E-4	45.0	41
GCGATCG	25	3.8914608E-5	45.0	9
CGTACGT	20	7.034077E-4	45.0	20
TTACGTC	20	7.034077E-4	45.0	33
CGTCGAT	20	7.034077E-4	45.0	41
CCGGTAT	25	3.8914608E-5	45.0	42
TATCGTG	20	7.034077E-4	45.0	25
AATCGTC	20	7.034077E-4	45.0	42
TAGTACG	50	2.1827873E-11	45.0	1
TACCGGT	25	3.8914608E-5	45.0	40
CGTAAGG	170	0.0	43.676468	2
CGGTCTA	185	0.0	42.567566	31
ACTACGG	80	0.0	42.1875	2
TGCGAAG	155	0.0	42.09677	1
GGCGATA	435	0.0	41.37931	8
TTACGGG	425	0.0	41.294117	3