SRR1545543_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545543_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1348369
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	5725	0.42458703811790394	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4567	0.3387055027221777	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCGGTA	35	1.2121382E-7	45.000004	41
CTCCGAT	25	3.8911654E-5	45.000004	20
CCGATCA	35	1.2121382E-7	45.000004	11
TGCGGAT	25	3.8911654E-5	45.000004	44
ACGGGTA	65	0.0	45.000004	5
TTATCCG	50	2.1827873E-11	45.000004	1
ACCTCGT	25	3.8911654E-5	45.000004	28
TACGCGC	35	1.2121382E-7	45.000004	34
TGCGATA	25	3.8911654E-5	45.000004	1
TGTTACG	45	3.8562575E-10	45.000004	1
ATGCGCA	25	3.8911654E-5	45.000004	12
TCGAGTA	25	3.8911654E-5	45.000004	12
CGGTACC	35	1.2121382E-7	45.000004	23
TATACGT	25	3.8911654E-5	45.000004	21
GCTAACG	45	3.8562575E-10	45.000004	1
TACGTCT	25	3.8911654E-5	45.000004	31
ACAGTCG	20	7.033722E-4	45.0	18
CACGATT	20	7.033722E-4	45.0	18
TCGATTG	20	7.033722E-4	45.0	1
GCGCATC	20	7.033722E-4	45.0	19