SRR1545539_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545539_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	905258
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	4830	0.5335495516195383	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4081	0.450810708107523	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCATCG	20	7.032491E-4	45.0	43
CGGGTAT	20	7.032491E-4	45.0	6
CTCACGA	160	0.0	45.0	24
GGTACGA	20	7.032491E-4	45.0	1
CGTATGG	25	3.890147E-5	45.0	2
CTACTAT	25	3.890147E-5	45.0	45
CGAGTGT	20	7.032491E-4	45.0	31
TCTCTAG	25	3.890147E-5	45.0	24
CGAAACC	25	3.890147E-5	45.0	29
ACGTTAC	20	7.032491E-4	45.0	26
GCAACGA	25	3.890147E-5	45.0	32
CTATATG	25	3.890147E-5	45.0	1
CATGACG	20	7.032491E-4	45.0	1
CTATAGC	45	3.8380676E-10	45.0	25
CGCATGT	20	7.032491E-4	45.0	38
TCTTACG	25	3.890147E-5	45.0	1
ACATTCG	20	7.032491E-4	45.0	16
CAACCCG	25	3.890147E-5	45.0	23
ATTCGCA	25	3.890147E-5	45.0	18
TTACTCG	35	1.2115379E-7	45.0	1