Basic Statistics
Measure | Value |
---|---|
Filename | SRR1545537_1.fastq.gz |
File type | Conventional base calls |
Encoding | Illumina 1.5 |
Total Sequences | 1869685 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7216 | 0.38594736546530567 | No Hit |
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC | 3235 | 0.17302379812642238 | No Hit |
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG | 3042 | 0.16270120367869453 | No Hit |
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG | 2601 | 0.13911434279036308 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGAACGC | 35 | 1.2124656E-7 | 45.000004 | 15 |
CTATACG | 20 | 7.0344214E-4 | 45.000004 | 1 |
TTACGTC | 20 | 7.0344214E-4 | 45.000004 | 26 |
CGTGTAA | 20 | 7.0344214E-4 | 45.000004 | 41 |
TGCGTAA | 30 | 2.1662345E-6 | 45.000004 | 1 |
ACGCATT | 25 | 3.8917475E-5 | 45.0 | 41 |
CCGTAAG | 25 | 3.8917475E-5 | 45.0 | 1 |
TATTACG | 25 | 3.8917475E-5 | 45.0 | 1 |
ACGTATG | 45 | 3.8562575E-10 | 45.0 | 1 |
TACGTCC | 25 | 3.8917475E-5 | 45.0 | 35 |
TAATGCG | 65 | 0.0 | 44.999996 | 1 |
GTTTACG | 95 | 0.0 | 42.63158 | 1 |
CTATGCG | 90 | 0.0 | 42.5 | 1 |
ATGACGT | 70 | 0.0 | 41.785717 | 31 |
AATGCGG | 205 | 0.0 | 41.707317 | 2 |
TCGCTAA | 65 | 0.0 | 41.53846 | 11 |
TATCGCG | 65 | 0.0 | 41.53846 | 1 |
TATTGCG | 115 | 0.0 | 41.08696 | 1 |
TGGGCGA | 705 | 0.0 | 40.531914 | 6 |
CGCATGG | 100 | 0.0 | 40.5 | 2 |