SRR1545531_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545531_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1543841
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5787	0.37484430067604113	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	4543	0.2942660546001823	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1668	0.10804221419174642	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1590	0.10298988043457842	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATTCCG	30	2.165987E-6	45.000004	30
GTCGTAC	30	2.165987E-6	45.000004	15
TGTTACG	60	0.0	45.000004	1
TGCGTAT	30	2.165987E-6	45.000004	15
CGTGCAA	20	7.0340396E-4	45.0	16
CGTTGTC	25	3.89143E-5	45.0	19
ATAGCCG	50	2.1827873E-11	45.0	2
CCAATCG	20	7.0340396E-4	45.0	24
CGACACT	25	3.89143E-5	45.0	10
CTAACGG	80	0.0	45.0	2
CGGATAT	20	7.0340396E-4	45.0	11
TCTCGTC	20	7.0340396E-4	45.0	26
CGTAACG	20	7.0340396E-4	45.0	45
ACGTATG	40	6.8175723E-9	45.0	1
GAACCGT	20	7.0340396E-4	45.0	38
CGGTCAT	20	7.0340396E-4	45.0	23
GCTACGA	205	0.0	45.0	10
CACGTCA	25	3.89143E-5	45.0	11
AGAATCG	20	7.0340396E-4	45.0	10
AATACGG	35	1.2122837E-7	45.0	2