SRR1545529_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545529_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	531280
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3939	0.7414169552778196	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1842	0.34670983285649754	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	949	0.17862520704713147	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	659	0.1240400542087035	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	586	0.11029965366661648	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	543	0.10220599307333234	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCCCTTA	25	3.887964E-5	45.0	40
CTCGTTA	20	7.0298585E-4	45.0	17
CGTATTC	20	7.0298585E-4	45.0	22
ACGTTAG	20	7.0298585E-4	45.0	1
CAACCGG	20	7.0298585E-4	45.0	41
TACGGGT	55	1.8189894E-12	45.0	4
TACGCGG	20	7.0298585E-4	45.0	2
TCGTAAG	20	7.0298585E-4	45.0	1
CTATTAC	20	7.0298585E-4	45.0	13
ACGTATT	20	7.0298585E-4	45.0	21
CGGTCTA	45	3.8380676E-10	45.0	31
ATAACGG	50	2.1827873E-11	45.0	2
CGCACAG	25	3.887964E-5	45.0	43
GATTCGT	25	3.887964E-5	45.0	9
GCGTATG	45	3.8380676E-10	45.0	1
ACGACTA	20	7.0298585E-4	45.0	12
GTCGGAT	20	7.0298585E-4	45.0	19
TACGGGC	30	2.1632895E-6	44.999996	4
CTCGAGG	60	0.0	44.999996	2
AAGGGTA	205	0.0	42.80488	5