SRR1545527_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545527_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	992085
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6212	0.6261560249373793	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2562	0.2582440012700525	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1555	0.1567406018637516	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1019	0.10271297318274139	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAATACG	35	1.2117016E-7	45.000004	1
CTTACCG	55	1.8189894E-12	45.000004	1
TTTAGCG	50	2.1827873E-11	45.0	1
CTATGCG	20	7.0328184E-4	45.0	1
GTACCTA	20	7.0328184E-4	45.0	22
CCTTAGT	40	6.8139343E-9	45.0	43
GATACCC	40	6.8139343E-9	45.0	3
TACTTCG	25	3.890419E-5	45.0	29
GATCGAC	25	3.890419E-5	45.0	9
GCGCAAA	25	3.890419E-5	45.0	10
ATCCGTT	25	3.890419E-5	45.0	33
ATATCGT	20	7.0328184E-4	45.0	1
TACGCGG	40	6.8139343E-9	45.0	2
GCCGACC	25	3.890419E-5	45.0	14
TACGCAT	25	3.890419E-5	45.0	38
CGTAGGC	45	3.8380676E-10	45.0	39
TATTACG	20	7.0328184E-4	45.0	1
TCGTAAT	25	3.890419E-5	45.0	33
CGTAATC	25	3.890419E-5	45.0	34
ACGTATA	20	7.0328184E-4	45.0	36