SRR1545526_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545526_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1734560
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8536	0.49211327368323954	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	8275	0.47706623005257814	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1764	0.10169726040033207	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGTAA	20	7.0342806E-4	45.000004	15
CCTTACG	20	7.0342806E-4	45.000004	23
ACCGGAT	40	6.8193913E-9	45.000004	21
CGAACCG	20	7.0342806E-4	45.000004	29
TCACCGA	20	7.0342806E-4	45.000004	44
CGAAACA	30	2.1661435E-6	45.000004	44
ACGTTAC	20	7.0342806E-4	45.000004	37
GCGCGAA	20	7.0342806E-4	45.000004	20
CACATCG	20	7.0342806E-4	45.000004	19
CATTGCG	20	7.0342806E-4	45.000004	1
CGACATA	30	2.1661435E-6	45.000004	41
TCAATCG	40	6.8193913E-9	45.000004	1
TCGGAAT	30	2.1661435E-6	45.000004	1
TACGCCC	40	6.8193913E-9	45.000004	10
ATTCACG	20	7.0342806E-4	45.000004	10
ACGTGCC	30	2.1661435E-6	45.000004	19
TCGTCCA	30	2.1661435E-6	45.000004	33
TTGCGAT	30	2.1661435E-6	45.000004	1
CGTACTC	20	7.0342806E-4	45.000004	31
ACGTCGT	40	6.8193913E-9	45.000004	38